bcl2fastq2 2.20.0-GCC-11.3.0bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.
Accessing bcl2fastq2 2.20.0-GCC-11.3.0
To load the module for bcl2fastq2 2.20.0-GCC-11.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps/2022a
module load bcl2fastq2/2.20.0-GCC-11.3.0
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the bcl2fastq2 website.
This version of bcl2fastq2 is a direct dependent of: SpaceRanger/2.0.1-GCC-11.3.0
Last modified on 28th April 2023