Installed Applications: 2022a and EL8-icelake

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). All 2022a or EL8-icelake applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Some of the nodes of this architecture have GPUs. The applications that run on the GPU nodes will usually have CUDA or fosscuda as part of the version. Please see the GPU information page for details about the available GPUs and targetting jobs to specific GPU types. The available GPU types are:

  • NVIDIA A100
  • NVIDIA A30
Application Version
aiohttp 3.8.3-GCCcore-11.3.0
AlphaFold 2.3.1-foss-2022a-CUDA-11.7.0
AlphaFold 2.3.1-foss-2022a
ANSYS 2023R1
ant 1.10.12-Java-11
arpack-ng 3.8.0-foss-2022a
Arrow 8.0.0-foss-2022a-CUDA-11.7.0
Arrow 8.0.0-foss-2022a
ATK 2.38.0-GCCcore-11.3.0
at-spi2-atk 2.38.0-GCCcore-11.3.0
at-spi2-core 2.44.1-GCCcore-11.3.0
Autoconf 2.71-GCCcore-11.3.0
Automake 1.16.5-GCCcore-11.3.0
Autotools 20220317-GCCcore-11.3.0
Barracuda_Virtual_Reactor 22.1.1-GCCcore-11.3.0
Bazel 5.1.1-GCCcore-11.3.0
bcl2fastq2 2.20.0-GCC-11.3.0
bcl-convert 4.0.3-2el7.x86_64
BeautifulSoup 4.10.0-GCCcore-11.3.0
binutils 2.38-GCCcore-11.3.0
binutils 2.38
Biopython 1.79-foss-2022a
Bison 3.8.2-GCCcore-11.3.0
Bison 3.8.2
Blender 3.4.1-linux-x86_64-CUDA-11.7.0
BLIS 0.9.0-GCC-11.3.0
Blosc 1.21.3-GCCcore-11.3.0
Blosc2 2.6.1-GCCcore-11.3.0
bokeh 2.4.3-foss-2022a
Boost 1.79.0-GCC-11.3.0
Brotli 1.0.9-GCCcore-11.3.0
bzip2 1.0.8-GCCcore-11.3.0
cairo 1.17.4-GCCcore-11.3.0
cell2location 0.1.3-foss-2022a-CUDA-11.7.0
cell2location 0.1.3-foss-2022a
Cellpose 2.2-foss-2022a-CUDA-11.7.0
Cellpose 2.2-foss-2022a
CellRanger 7.1.0
Clang 13.0.1-GCCcore-11.3.0
cma 3.3.0-foss-2022a
CMake 3.24.3-GCCcore-11.3.0
CMake 3.23.1-GCCcore-11.3.0
coexist 0.3.1-foss-2022a
cppy 1.2.1-GCCcore-11.3.0
CUDA 11.7.0
cuDNN 8.4.1.50-CUDA-11.7.0
cURL 7.83.0-GCCcore-11.3.0
dask 2022.10.0-foss-2022a
DB 18.1.40-GCCcore-11.3.0
DBus 1.14.0-GCCcore-11.3.0
deepdiff 5.8.1-GCCcore-11.3.0
dill 0.3.6-GCCcore-11.3.0
dm-tree 0.1.8-GCCcore-11.3.0
double-conversion 3.2.0-GCCcore-11.3.0
Doxygen 1.9.4-GCCcore-11.3.0
Eigen 3.4.0-GCCcore-11.3.0
elfutils 0.187-GCCcore-11.3.0
expat 2.4.8-GCCcore-11.3.0
expecttest 0.1.3-GCCcore-11.3.0
FFmpeg 4.4.2-GCCcore-11.3.0
FFTW 3.3.10-NVHPC-22.7-CUDA-11.7.0
FFTW 3.3.10-GCC-11.3.0
FFTW.MPI 3.3.10-nvompi-2022.07
FFTW.MPI 3.3.10-gompi-2022a
flatbuffers 2.0.7-GCCcore-11.3.0
flatbuffers-python 2.0-GCCcore-11.3.0
flex 2.6.4-GCCcore-11.3.0
flex 2.6.4
FlexiBLAS 3.2.0-NVHPC-22.7-CUDA-11.7.0
FlexiBLAS 3.2.0-GCC-11.3.0
fontconfig 2.14.0-GCCcore-11.3.0
foss 2022a
freetype 2.12.1-GCCcore-11.3.0
FriBidi 1.0.12-GCCcore-11.3.0
GCC 11.3.0
GCCcore 11.3.0
Gdk-Pixbuf 2.42.8-GCCcore-11.3.0
GDRCopy 2.3-GCCcore-11.3.0
gettext 0.21-GCCcore-11.3.0
gettext 0.21
Ghostscript 9.56.1-GCCcore-11.3.0
giflib 5.2.1-GCCcore-11.3.0
git 2.36.0-GCCcore-11.3.0-nodocs
GitPython 3.1.27-GCCcore-11.3.0
GLib 2.72.1-GCCcore-11.3.0
GLPK 5.0-GCCcore-11.3.0
GMP 6.2.1-GCCcore-11.3.0
GObject-Introspection 1.72.0-GCCcore-11.3.0
gompi 2022a
gperf 3.1-GCCcore-11.3.0
Graphene 1.10.8-GCCcore-11.3.0
graphite2 1.3.14-GCCcore-11.3.0
groff 1.22.4-GCCcore-11.3.0
GSL 2.7-GCC-11.3.0
GST-plugins-bad 1.20.2-GCC-11.3.0
GST-plugins-base 1.20.2-GCC-11.3.0
GStreamer 1.20.2-GCC-11.3.0
GTK2 2.24.33-GCCcore-11.3.0
GTK4 4.7.0-GCC-11.3.0
gzip 1.12-GCCcore-11.3.0
h5py 3.7.0-foss-2022a
HarfBuzz 4.2.1-GCCcore-11.3.0
HDF5 1.13.1-gompi-2022a
HDF5 1.12.2-gompi-2022a
help2man 1.49.2-GCCcore-11.3.0
HH-suite 3.3.0-gompi-2022a
HMMER 3.3.2-gompi-2022a
HPL 2.3-foss-2022a
HTSlib 1.16-GCC-11.3.0
hwloc 2.7.1-GCCcore-11.3.0
hypothesis 6.46.7-GCCcore-11.3.0
ICU 71.1-GCCcore-11.3.0
igraph 0.10.3-foss-2022a
IGV 2.16.0-Java-11
iimpi 2022a
ilastik 1.4.0-linux-x64
imageio 2.22.2-foss-2022a
ImageMagick 7.1.0-37-GCCcore-11.3.0
Imath 3.1.5-GCCcore-11.3.0
imkl 2022.1.0
imkl-FFTW 2022.1.0-iimpi-2022a
impi 2021.6.0-intel-compilers-2022.1.0
intel 2022a
intel-compilers 2022.1.0
InterProScan 5.61-93.0-foss-2022a
intltool 0.51.0-GCCcore-11.3.0
IPython 8.5.0-GCCcore-11.3.0
JasPer 2.0.33-GCCcore-11.3.0
Java 11.0.16
Java 11
jax 0.4.4-foss-2022a-CUDA-11.7.0
jax 0.4.4-foss-2022a
jax 0.3.23-foss-2022a
jax 0.3.14-foss-2022a-CUDA-11.7.0
jbigkit 2.1-GCCcore-11.3.0
JsonCpp 1.9.5-GCCcore-11.3.0
Kalign 3.3.5-GCCcore-11.3.0
LAME 3.100-GCCcore-11.3.0
leidenalg 0.9.1-foss-2022a
Leptonica 1.83.0-GCCcore-11.3.0
libarchive 3.6.1-GCCcore-11.3.0
libdeflate 1.10-GCCcore-11.3.0
libdrm 2.4.110-GCCcore-11.3.0
libepoxy 1.5.10-GCCcore-11.3.0
libevent 2.1.12-GCCcore-11.3.0
libfabric 1.15.1-GCCcore-11.3.0
libffi 3.4.2-GCCcore-11.3.0
libgd 2.3.3-GCCcore-11.3.0
libGLU 9.0.2-GCCcore-11.3.0
libglvnd 1.4.0-GCCcore-11.3.0
libiconv 1.17-GCCcore-11.3.0
LiBiNorm 2.5
libjpeg-turbo 2.1.3-GCCcore-11.3.0
libpciaccess 0.16-GCCcore-11.3.0
libpng 1.6.37-GCCcore-11.3.0
libpng 1.5.30
libreadline 8.1.2-GCCcore-11.3.0
libsodium 1.0.18-GCCcore-11.3.0
LibTIFF 4.3.0-GCCcore-11.3.0
libtool 2.4.7-GCCcore-11.3.0
libunwind 1.6.2-GCCcore-11.3.0
libwebp 1.2.4-GCCcore-11.3.0
libxml2 2.9.13-GCCcore-11.3.0
libxslt 1.1.34-GCCcore-11.3.0
libyaml 0.2.5-GCCcore-11.3.0
LittleCMS 2.13.1-GCCcore-11.3.0
LLVM 12.0.1-GCCcore-11.3.0
LMDB 0.9.29-GCCcore-11.3.0
lxml 4.9.1-GCCcore-11.3.0
lz4 1.9.3-GCCcore-11.3.0
LZO 2.10-GCCcore-11.3.0
M4 1.4.19-GCCcore-11.3.0
M4 1.4.19
magma 2.6.2-foss-2022a-CUDA-11.7.0
Mako 1.2.0-GCCcore-11.3.0
matplotlib 3.5.2-foss-2022a
Mesa 22.0.3-GCCcore-11.3.0
Meson 0.62.1-GCCcore-11.3.0
Miniconda3 4.12.0
Miniconda3 22.11.1-1
MiXCR 4.3.2-Java-11
MNE-Python 1.3.1-foss-2022a
mne-rsa 0.8-foss-2022a
modbam2bed 0.7.0-GCC-11.3.0
MPFR 4.1.0-GCCcore-11.3.0
NASM 2.15.05-GCCcore-11.3.0
natsort 8.2.0-foss-2022a
NCCL 2.12.12-GCCcore-11.3.0-CUDA-11.7.0
ncurses 6.3-GCCcore-11.3.0
ncurses 6.2
ncurses 5.9
networkx 2.8.4-foss-2022a
NiBabel 4.0.2-foss-2022a
Ninja 1.10.2-GCCcore-11.3.0
NLTK 3.8-foss-2022a
nodejs 16.15.1-GCCcore-11.3.0
NSPR 4.34-GCCcore-11.3.0
NSS 3.79-GCCcore-11.3.0
nsync 1.25.0-GCCcore-11.3.0
numactl 2.0.14-GCCcore-11.3.0
numba 0.56.4-foss-2022a
NVHPC 22.7-CUDA-11.7.0
nvofbf 2022.07
nvompi 2022.07
ont-remora 2.0.0-foss-2022a-CUDA-11.7.0
ont-remora 2.0.0-foss-2022a
OpenBLAS 0.3.20-NVHPC-22.7-CUDA-11.7.0
OpenBLAS 0.3.20-GCC-11.3.0
OpenCV 4.6.0-foss-2022a-CUDA-11.7.0-contrib
OpenCV 4.6.0-foss-2022a-contrib
OpenEXR 3.1.5-GCCcore-11.3.0
OpenJPEG 2.5.0-GCCcore-11.3.0
OpenMM 7.7.0-foss-2022a
OpenMPI 4.1.4-NVHPC-22.7-CUDA-11.7.0
OpenMPI 4.1.4-GCC-11.3.0
OpenMPI-container 4.1.4
OpenPGM 5.2.122-GCCcore-11.3.0
openpyxl 3.0.10-GCCcore-11.3.0
OpenSSL 1.1
OSU-Micro-Benchmarks 5.9-iimpi-2022a
OSU-Micro-Benchmarks 5.9-gompi-2022a
Pango 1.50.7-GCCcore-11.3.0
parasail 2.6-GCC-11.3.0
pcgr 1.2.0
pcgrr 1.2.0
PCRE 8.45-GCCcore-11.3.0
PCRE2 10.40-GCCcore-11.3.0
Perl 5.34.1-GCCcore-11.3.0
pharokka 1.2.0
PICI-LIGGGHTS 3.8.1-foss-2022a-VTK-9.2.2
Pillow 9.1.1-GCCcore-11.3.0
pixman 0.40.0-GCCcore-11.3.0
pkgconf 1.8.0-GCCcore-11.3.0
pkgconf 1.8.0
pkg-config 0.29.2-GCCcore-11.3.0
pkgconfig 1.5.5-GCCcore-11.3.0-python
plotly.py 5.12.0-GCCcore-11.3.0
PMIx 4.1.2-GCCcore-11.3.0
poetry 1.2.2-GCCcore-11.3.0
polars 0.17.12-foss-2022a
protobuf 3.19.4-GCCcore-11.3.0
protobuf-python 3.19.4-GCCcore-11.3.0
ptwt 0.1.4.post2-foss-2022a-CUDA-11.7.0
ptwt 0.1.4.post2-foss-2022a
pybind11 2.9.2-GCCcore-11.3.0
PyCairo 1.21.0-GCCcore-11.3.0
py-cpuinfo 9.0.0-GCCcore-11.3.0
pydicom 2.3.0-GCCcore-11.3.0
PyGObject 3.42.1-GCCcore-11.3.0
PyQt5 5.15.5-GCCcore-11.3.0
Pysam 0.20.0-GCC-11.3.0
PyTables 3.8.0-foss-2022a
pytesseract 0.3.10-foss-2022a
pytest-xdist 2.5.0-GCCcore-11.3.0
Python 3.10.4-GCCcore-11.3.0-bare
Python 3.10.4-GCCcore-11.3.0
Python 2.7.18-GCCcore-11.3.0-bare
python-igraph 0.10.3-foss-2022a
python-parasail 1.3.3-foss-2022a
PyTorch 1.12.1-foss-2022a-CUDA-11.7.0
PyTorch 1.12.1-foss-2022a
PyTorch-Lightning 1.9.3-foss-2022a-CUDA-11.7.0
PyTorch-Lightning 1.9.3-foss-2022a
pyvista 0.36.1-foss-2022a
PyYAML 6.0-GCCcore-11.3.0
Qhull 2020.2-GCCcore-11.3.0
Qt5 5.15.5-GCCcore-11.3.0
QtPy 2.3.0-GCCcore-11.3.0
RapidJSON 1.1.0-GCCcore-11.3.0
RE2 2022-06-01-GCCcore-11.3.0
re2c 2.2-GCCcore-11.3.0
Rust 1.65.0-GCCcore-11.3.0
Rust 1.60.0-GCCcore-11.3.0
ScaLAPACK 2.2.0-nvompi-2022.07-fb
ScaLAPACK 2.2.0-gompi-2022a-fb
scanpy 1.9.1-foss-2022a
scikit-build 0.15.0-GCCcore-11.3.0
scikit-image 0.19.3-foss-2022a
scikit-learn 1.1.2-foss-2022a
scikit-misc 0.1.4-foss-2022a
SciPy-bundle 2022.05-foss-2022a
scvi-tools 0.20.1-foss-2022a-CUDA-11.7.0
scvi-tools 0.20.1-foss-2022a
Seaborn 0.12.1-foss-2022a
SHAP 0.41.0-foss-2022a
Simpack 2023.3-foss-2022a
sklearn-pandas 2.2.0-foss-2022a
snappy 1.1.9-GCCcore-11.3.0
SpaceRanger 2.0.1-GCC-11.3.0
SQLite 3.38.3-GCCcore-11.3.0
STAR-CCM+ 18.02.008
Stata 17.rev2023-01-10
statsmodels 0.13.1-foss-2022a
SWIG 4.0.2-GCCcore-11.3.0
Szip 2.1.1-GCCcore-11.3.0
Tcl 8.6.12-GCCcore-11.3.0
tensorboardX 2.5.1-foss-2022a
TensorFlow 2.11.0-foss-2022a-CUDA-11.7.0
TensorFlow 2.11.0-foss-2022a
tesseract 5.3.0-GCCcore-11.3.0
Tk 8.6.12-GCCcore-11.3.0
Tkinter 3.10.4-GCCcore-11.3.0
tqdm 4.64.0-GCCcore-11.3.0
Transformers 4.24.0-foss-2022a-CUDA-11.7.0
Transformers 4.24.0-foss-2022a
UCC 1.0.0-GCCcore-11.3.0
UCC-CUDA 1.0.0-GCCcore-11.3.0-CUDA-11.7.0
UCX 1.12.1-GCCcore-11.3.0
UCX-CUDA 1.12.1-GCCcore-11.3.0-CUDA-11.7.0
umap-learn 0.5.3-foss-2022a
UnZip 6.0-GCCcore-11.3.0
utf8proc 2.7.0-GCCcore-11.3.0
util-linux 2.38-GCCcore-11.3.0
VASP 6.3.2-nvofbf-2022.07
VASP 6.3.2-intel-2022a
VASP 6.3.2-foss-2022a-Wannier90
VASP 6.3.2-foss-2022a
VTK 9.2.2-foss-2022a
Wand 0.6.11-foss-2022a
wandb 0.13.6-GCC-11.3.0
Wannier90 3.1.0-foss-2022a-serial
Wayland 1.20.0-GCCcore-11.3.0
X11 20220504-GCCcore-11.3.0
x264 20220620-GCCcore-11.3.0
x265 3.5-GCCcore-11.3.0
xorg-macros 1.19.3-GCCcore-11.3.0
XZ 5.2.5-GCCcore-11.3.0
Yasm 1.3.0-GCCcore-11.3.0
Z3 4.10.2-GCCcore-11.3.0
ZeroMQ 4.3.4-GCCcore-11.3.0
Zip 3.0-GCCcore-11.3.0
zlib 1.2.12-GCCcore-11.3.0
zlib 1.2.12
zlib 1.2.11
zstd 1.5.2-GCCcore-11.3.0