RagTag 2.1.0-foss-2022a

RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: homology-based misassembly correction, homology-based assembly scaffolding and patching, and scaffold merging. RagTag also provides command line utilities for working with common genome assembly file formats.

Accessing RagTag 2.1.0-foss-2022a

To load the module for RagTag 2.1.0-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load RagTag/2.1.0-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelakeEL8-icelake

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the RagTag website.

Dependencies

This version of RagTag has a direct dependency on: foss/2022a minimap2/2.24-GCCcore-11.3.0 MUMmer/4.0.0rc1-GCCcore-11.3.0 networkx/2.8.4-foss-2022a Pysam/0.19.1-GCC-11.3.0 Python/3.10.4-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a unimap/0.1-GCCcore-11.3.0

Last modified on 27th October 2023