unimap 0.1-GCCcore-11.3.0

Unimap is a fork of minimap2 optimized for assembly-to-reference alignment. It integrates the minigraph chaining algorithm and can align through long INDELs (up to 100kb by default) much faster than minimap2. Unimap is a better fit for resolving segmental duplications and is recommended over minimap2 for alignment between high-quality assemblies. Unimap does not replace minimap2 for other types of alignment. It drops the support of multi-part index and short-read mapping. Its long-read alignment is different from minimap2 but is not necessarily better. Unimap is more of a specialized minimap2 at the moment.

Accessing unimap 0.1-GCCcore-11.3.0

To load the module for unimap 0.1-GCCcore-11.3.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load unimap/0.1-GCCcore-11.3.0

BEAR Apps Version

2022a

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the unimap website.

Dependencies

This version of unimap has a direct dependency on: GCCcore/11.3.0

Required By

This version of unimap is a direct dependent of: RagTag/2.1.0-foss-2022a

Last modified on 27th October 2023