freebayes 1.3.7-foss-2022a-R-4.2.3

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

Accessing freebayes 1.3.7-foss-2022a-R-4.2.3

To load the module for freebayes 1.3.7-foss-2022a-R-4.2.3 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load freebayes/1.3.7-foss-2022a-R-4.2.3

BEAR Apps Version

2022a

Architectures

EL8-cascadelakeEL8-icelake

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the freebayes website.

Dependencies

This version of freebayes has a direct dependency on: foss/2022a libffi/3.4.2-GCCcore-11.3.0 parallel/20220722-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 R/4.2.3-foss-2022a SeqLib/1.2.0-GCC-11.3.0 vcflib/1.0.9-foss-2022a-R-4.2.3 VCFtools/0.1.16-GCC-11.3.0

Last modified on 3rd November 2023