SeqLib 1.2.0-GCC-11.3.0

C++ interface to HTSlib, BWA-MEM and Fermi.

Accessing SeqLib 1.2.0-GCC-11.3.0

To load the module for SeqLib 1.2.0-GCC-11.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load SeqLib/1.2.0-GCC-11.3.0

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SeqLib website.

Dependencies

This version of SeqLib has a direct dependency on: BWA/0.7.17-GCCcore-11.3.0 bzip2/1.0.8-GCCcore-11.3.0 fermi-lite/20190320-GCCcore-11.3.0 GCC/11.3.0 HTSlib/1.15.1-GCC-11.3.0 JsonCpp/1.9.5-GCCcore-11.3.0 PCRE/8.45-GCCcore-11.3.0 SSW/1.1-GCCcore-11.3.0 XZ/5.2.5-GCCcore-11.3.0 zlib/1.2.12-GCCcore-11.3.0

Required By

This version of SeqLib is a direct dependent of: freebayes/1.3.7-foss-2022a-R-4.2.3

Last modified on 3rd November 2023