HTSlib 1.15.1-GCC-11.3.0

There is a newer install of HTSlib

A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix

Accessing HTSlib 1.15.1-GCC-11.3.0

To load the module for HTSlib 1.15.1-GCC-11.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load HTSlib/1.15.1-GCC-11.3.0

BEAR Apps Version

2022a

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the HTSlib website.

Dependencies

This version of HTSlib has a direct dependency on: bzip2/1.0.8-GCCcore-11.3.0 cURL/7.83.0-GCCcore-11.3.0 GCC/11.3.0 XZ/5.2.5-GCCcore-11.3.0 zlib/1.2.12-GCCcore-11.3.0

Required By

This version of HTSlib is a direct dependent of: AUGUSTUS/3.5.0-foss-2022a BCFtools/1.15.1-GCC-11.3.0 Bio-DB-HTS/3.01-GCC-11.3.0 Clair3/1.0.4-foss-2022a kallisto/0.48.0-gompi-2022a medaka/1.11.1-foss-2022a pblat/2.5.1-foss-2022a SeqLib/1.2.0-GCC-11.3.0 STAR/2.7.10b-GCC-11.3.0 StringTie/2.2.1-GCC-11.3.0 tabixpp/1.1.2-GCC-11.3.0 Trinity/2.15.1-foss-2022a vcflib/1.0.9-foss-2022a-R-4.2.3 VCFtools/0.1.16-GCC-11.3.0

Other Versions

These versions of HTSlib are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 19th October 2023