Installed Applications: 2022b

Applications available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
Abseil 20230125.2-GCCcore-12.2.0
ALAMODE 1.4.2-foss-2022b
ant 1.10.12-Java-11
Armadillo 11.4.3-foss-2022b
arpack-ng 3.8.0-foss-2022b
Arrow 11.0.0-gfbf-2022b
arrow-R 11.0.0.3-foss-2022b-R-4.3.1
ATK 2.38.0-GCCcore-12.2.0
at-spi2-atk 2.38.0-GCCcore-12.2.0
at-spi2-core 2.46.0-GCCcore-12.2.0
Autoconf 2.71-GCCcore-12.2.0
autograd 1.6.3-foss-2022b
Automake 1.16.5-GCCcore-12.2.0
Autotools 20220317-GCCcore-12.2.0
BamTools 2.5.2-GCC-12.2.0
baysor 0.6.2-x86_x64-linux
BCFtools 1.17-GCC-12.2.0
BEAR-Python-MSc-Bioinformatics 2022b-foss-2022b
BEAR-R-bio 2022b-foss-2022b-R-4.3.1
BeautifulSoup 4.11.1-GCCcore-12.2.0
BEDTools 2.30.0-GCC-12.2.0
binutils 2.39-GCCcore-12.2.0
binutils 2.39
Biopython 1.81-foss-2022b
BioServices 1.11.2-foss-2022b
Bison 3.8.2-GCCcore-12.2.0
Bison 3.8.2
BLIS 0.9.0-GCC-12.2.0
bokeh 3.2.1-foss-2022b
Boost 1.81.0-GCC-12.2.0
Boost.Python 1.81.0-GCC-12.2.0
Bowtie 1.3.1-GCC-12.2.0
Brotli 1.0.9-GCCcore-12.2.0
Brunsli 0.1-GCCcore-12.2.0
bzip2 1.0.8-GCCcore-12.2.0
cairo 1.17.4-GCCcore-12.2.0
celldex 1.10.1-foss-2022b-R-4.3.1
CFITSIO 4.2.0-GCCcore-12.2.0
CharLS 2.4.2-GCCcore-12.2.0
cma 3.3.0-foss-2022b
CMake 3.24.3-GCCcore-12.2.0
coexist 0.3.2-foss-2022b
CoordgenLibs 3.0.2-gompi-2022b
cppy 1.2.1-GCCcore-12.2.0
cURL 7.86.0-GCCcore-12.2.0
cutadapt 4.4-GCCcore-12.2.0
dask 2023.7.1-foss-2022b
DB 18.1.40-GCCcore-12.2.0
DBus 1.15.2-GCCcore-12.2.0
dcm2bids 3.1.1-foss-2022b
dcm2niix 1.0.20230411-GCCcore-12.2.0
deal.II 9.5.1-foss-2022b-muparser
deal.II 9.5.1-foss-2022b
double-conversion 3.2.1-GCCcore-12.2.0
Doxygen 1.9.5-GCCcore-12.2.0
Eigen 3.4.0-GCCcore-12.2.0
elfutils 0.189-GCCcore-12.2.0
ELPA 2022.05.001-foss-2022b
expat 2.4.9-GCCcore-12.2.0
expecttest 0.1.3-GCCcore-12.2.0
faahKO 1.40.0-foss-2022b-R-4.3.1
FFmpeg 5.1.2-GCCcore-12.2.0
ffnvcodec 11.1.5.2
FFTW 3.3.10-GCC-12.2.0
FFTW.MPI 3.3.10-gompi-2022b
FLAC 1.4.2-GCCcore-12.2.0
flex 2.6.4-GCCcore-12.2.0
flex 2.6.4
FlexiBLAS 3.2.1-GCC-12.2.0
fontconfig 2.14.1-GCCcore-12.2.0
foss 2022b
FreeImage 3.18.0-GCCcore-12.2.0
freetype 2.12.1-GCCcore-12.2.0
FriBidi 1.0.12-GCCcore-12.2.0
GATK 4.4.0.0-GCCcore-12.2.0-Java-17
gc 8.2.4-GCCcore-12.2.0
GCC 12.2.0
GCCcore 12.2.0
GDAL 3.6.2-foss-2022b
Gdk-Pixbuf 2.42.10-GCCcore-12.2.0
GEOS 3.11.1-GCC-12.2.0
gettext 0.21.1-GCCcore-12.2.0
gettext 0.21.1
gfbf 2022b
ggfortify 0.4.16-foss-2022b-R-4.3.1
Ghostscript 10.0.0-GCCcore-12.2.0
giflib 5.2.1-GCCcore-12.2.0
git 2.38.1-GCCcore-12.2.0-nodocs
GLib 2.75.0-GCCcore-12.2.0
GLM 0.9.9.8-GCCcore-12.2.0
GLPK 5.0-GCCcore-12.2.0
GMP 6.2.1-GCCcore-12.2.0
GObject-Introspection 1.74.0-GCCcore-12.2.0
gompi 2022b
googletest 1.12.1-GCCcore-12.2.0
gperf 3.1-GCCcore-12.2.0
gprofiler-official 1.0.0-foss-2022b
Graphene 1.10.8-GCCcore-12.2.0
graphite2 1.3.14-GCCcore-12.2.0
Graphviz 8.1.0-GCCcore-12.2.0
graphviz 0.20.1-foss-2022b
groff 1.22.4-GCCcore-12.2.0
Groovy 4.0.15-Java-17
GSL 2.7-GCCcore-12.2.0
GSL 2.7-GCC-12.2.0
GST-plugins-bad 1.22.5-GCC-12.2.0
GST-plugins-base 1.22.1-GCCcore-12.2.0
GStreamer 1.22.1-GCCcore-12.2.0
GTK3 3.24.35-GCCcore-12.2.0
GTK4 4.11.3-GCC-12.2.0
GTS 0.7.6-GCCcore-12.2.0
Guile 3.0.9-GCCcore-12.2.0
gzip 1.12-GCCcore-12.2.0
h5py 3.8.0-foss-2022b
HarfBuzz 5.3.1-GCCcore-12.2.0
Harminv 1.4.2-foss-2022b
HDF 4.2.15-GCCcore-12.2.0
HDF5 1.14.0-gompi-2022b
HDFView 3.2.0-Java-17-centos8
help2man 1.49.2-GCCcore-12.2.0
Highway 1.0.3-GCCcore-12.2.0
HPL 2.3-foss-2022b
HTSlib 1.17-GCC-12.2.0
hwloc 2.8.0-GCCcore-12.2.0
hypothesis 6.68.2-GCCcore-12.2.0
ICU 72.1-GCCcore-12.2.0
imageio 2.31.1-foss-2022b
ImageMagick 7.1.0-53-GCCcore-12.2.0
Imath 3.1.6-GCCcore-12.2.0
intermine 1.13.0-GCCcore-12.2.0
intltool 0.51.0-GCCcore-12.2.0
IPython 8.14.0-GCCcore-12.2.0
iRF 3.0.0-foss-2022b-R-4.3.1
IRkernel 1.3.2-foss-2022b-R-4.3.1
ISA-L 2.30.0-GCCcore-12.2.0
JasPer 4.0.0-GCCcore-12.2.0
Java 17.0.6
Java 17
Java 11.0.18
jbigkit 2.1-GCCcore-12.2.0
Jblob 3.0
json-c 0.16-GCCcore-12.2.0
Julia 1.9.3-linux-x86_64
JupyterLab 4.0.3-GCCcore-12.2.0
jupyter-server 2.7.0-GCCcore-12.2.0
kinbot 2.2.1-foss-2022b
LAME 3.100-GCCcore-12.2.0
LERC 4.0.0-GCCcore-12.2.0
Lethe 20231028-foss-2022b
Lethe 20230901-foss-2022b
libarchive 3.6.1-GCCcore-12.2.0
libctl 4.5.1-GCCcore-12.2.0
libdeflate 1.15-GCCcore-12.2.0
libdrm 2.4.114-GCCcore-12.2.0
libepoxy 1.5.10-GCCcore-12.2.0
libevent 2.1.12-GCCcore-12.2.0
libfabric 1.16.1-GCCcore-12.2.0
libffi 3.4.4-GCCcore-12.2.0
libgd 2.3.3-GCCcore-12.2.0
libGDSII 0.21-GCCcore-12.2.0
libgeotiff 1.7.1-GCCcore-12.2.0
libgit2 1.5.0-GCCcore-12.2.0
libGLU 9.0.2-GCCcore-12.2.0
libglvnd 1.6.0-GCCcore-12.2.0
libiconv 1.17-GCCcore-12.2.0
libjpeg-turbo 2.1.4-GCCcore-12.2.0
libogg 1.3.5-GCCcore-12.2.0
libopus 1.3.1-GCCcore-12.2.0
libpciaccess 0.17-GCCcore-12.2.0
libpng 1.6.38-GCCcore-12.2.0
libreadline 8.2-GCCcore-12.2.0
libsndfile 1.2.0-GCCcore-12.2.0
libsodium 1.0.18-GCCcore-12.2.0
LibTIFF 4.4.0-GCCcore-12.2.0
libtirpc 1.3.3-GCCcore-12.2.0
libtool 2.4.7-GCCcore-12.2.0
libunistring 1.1-GCCcore-12.2.0
libunwind 1.6.2-GCCcore-12.2.0
libvorbis 1.3.7-GCCcore-12.2.0
libwebp 1.3.1-GCCcore-12.2.0
libxc 6.1.0-GCC-12.2.0
libxml2 2.10.3-GCCcore-12.2.0
libxslt 1.1.37-GCCcore-12.2.0
libyaml 0.2.5-GCCcore-12.2.0
LittleCMS 2.14-GCCcore-12.2.0
LLVM 15.0.5-GCCcore-12.2.0
lxml 4.9.2-GCCcore-12.2.0
lz4 1.9.4-GCCcore-12.2.0
M4 1.4.19-GCCcore-12.2.0
M4 1.4.19
maeparser 1.3.1-gompi-2022b
maftools 2.16.0-foss-2022b-R-4.3.1
make 4.3-GCCcore-12.2.0
Mako 1.2.4-GCCcore-12.2.0
MAST 1.26.0-foss-2022b-R-4.3.1
MATIO 1.5.23-GCCcore-12.2.0
matplotlib 3.7.0-gfbf-2022b
maturin 1.1.0-GCCcore-12.2.0
Meep 1.28.0-foss-2022b
Mesa 22.2.4-GCCcore-12.2.0
Meson 0.64.0-GCCcore-12.2.0
meson-python 0.11.0-GCCcore-12.2.0
METIS 5.1.0-GCCcore-12.2.0
mlxtend 0.22.0-gfbf-2022b
MOFA2 1.10.0-foss-2022b-R-4.3.1
mofapy2 0.7.0-foss-2022b
monocle 2.28.0-foss-2022b-R-4.3.1
MPB 1.11.1-foss-2022b
MPFR 4.2.0-GCCcore-12.2.0
mpi4py 3.1.4-gompi-2022b
msPurity 1.26.0-foss-2022b-R-4.3.1
MSstats 4.8.6-foss-2022b-R-4.3.1
muParser 2.3.4-GCCcore-12.2.0
mvlearn 0.5.0-foss-2022b
NASM 2.15.05-GCCcore-12.2.0
ncurses 6.3-GCCcore-12.2.0
ncurses 6.3
netCDF 4.9.0-gompi-2022b
nettle 3.8.1-GCCcore-12.2.0
networkx 3.0-gfbf-2022b
Ninja 1.11.1-GCCcore-12.2.0
nlohmann_json 3.11.2-GCCcore-12.2.0
NLopt 2.7.1-GCCcore-12.2.0
NLopt 2.7.1-foss-2022b-Python
NLTK 3.8.1-foss-2022b
nodejs 18.12.1-GCCcore-12.2.0
NSPR 4.35-GCCcore-12.2.0
NSS 3.85-GCCcore-12.2.0
numactl 2.0.16-GCCcore-12.2.0
numdiff 5.9.0-GCCcore-12.2.0
occt 7.7.0-foss-2022b
OpenBabel 3.1.1-gompi-2022b
OpenBLAS 0.3.21-GCC-12.2.0
OpenCV 4.8.0-foss-2022b-contrib
OpenEXR 3.1.5-GCCcore-12.2.0
OpenJPEG 2.5.0-GCCcore-12.2.0
OpenMPI 4.1.4-GCC-12.2.0
OpenPGM 5.2.122-GCCcore-12.2.0
OpenSSL 1.1
OSU-Micro-Benchmarks 6.2-gompi-2022b
ottr 1.4.0-foss-2022b-R-4.3.1
p4est 2.3.6-foss-2022b
pandaR 1.32.0-foss-2022b-R-4.3.1
Pandoc 2.13
Pango 1.50.12-GCCcore-12.2.0
patchelf 0.17.2-GCCcore-12.2.0
PCRE 8.45-GCCcore-12.2.0
PCRE2 10.40-GCCcore-12.2.0
pept 0.5.1-foss-2022b
Perl 5.36.0-GCCcore-12.2.0-minimal
Perl 5.36.0-GCCcore-12.2.0
picard 2.27.5-Java-11
PICI-LIGGGHTS 3.8.1-foss-2022b
pigz 2.7-GCCcore-12.2.0
Pillow 9.4.0-GCCcore-12.2.0
pixman 0.42.2-GCCcore-12.2.0
pkgconf 1.9.3-GCCcore-12.2.0
pkgconf 1.8.0
pkg-config 0.29.2-GCCcore-12.2.0
pkgconfig 1.5.5-GCCcore-12.2.0-python
plotly.py 5.13.1-GCCcore-12.2.0
PMIx 4.2.2-GCCcore-12.2.0
polars 0.19.12-foss-2022b
PROJ 9.1.1-GCCcore-12.2.0
protobuf 23.0-GCCcore-12.2.0
protobuf-python 4.23.0-GCCcore-12.2.0
pybind11 2.10.3-GCCcore-12.2.0
PyCairo 1.24.0-GCCcore-12.2.0
PyGObject 3.44.1-GCCcore-12.2.0
pyhpo 3.2.2-gfbf-2022b
pytest-rerunfailures 12.0-GCCcore-12.2.0
pytest-shard 0.1.2-GCCcore-12.2.0
Python 3.10.8-GCCcore-12.2.0-bare
Python 3.10.8-GCCcore-12.2.0
Python 2.7.18-GCCcore-12.2.0-bare
python-isal 1.1.0-GCCcore-12.2.0
PyTorch 1.13.1-foss-2022b
pyvis 0.3.1-foss-2022b
pyvista 0.41.1-foss-2022b
PyYAML 6.0-GCCcore-12.2.0
Qhull 2020.2-GCCcore-12.2.0
Qt5 5.15.7-GCCcore-12.2.0
QuantumESPRESSO 7.2-foss-2022b
QuPath 0.4.4-Java-17
R 4.3.1-foss-2022b
RapidJSON 1.1.0-GCCcore-12.2.0
R-bundle-Bioconductor 3.17-foss-2022b-R-4.3.1
RDKit 2023.03.3-foss-2022b
RE2 2023-03-01-GCCcore-12.2.0
re2c 3.0-GCCcore-12.2.0
Rust 1.73.0-GCCcore-12.2.0
Rust 1.65.0-GCCcore-12.2.0
SAMtools 1.17-GCC-12.2.0
ScaLAPACK 2.2.0-gompi-2022b-fb
scikit-image 0.21.0-foss-2022b
scikit-learn 1.2.1-gfbf-2022b
scikit-plot 0.3.7-foss-2022b
SciPy-bundle 2023.02-gfbf-2022b
SCOTCH 7.0.3-gompi-2022b
SDL2 2.26.3-GCCcore-12.2.0
SDMtune 1.3.1-foss-2022b-R-4.3.1
Seaborn 0.12.2-foss-2022b
sequenza 3.0.0-foss-2022b
sequenza-utils 3.0.0-foss-2022b
setuptools 64.0.3-GCCcore-12.2.0
ShortStack 4.0.2-foss-2022b
ShortTracks 1.1-foss-2022b
SignalP 6.0h-foss-2022b-fast
smotefamily 1.3.1-foss-2022b-R-4.3.1
snappy 1.1.9-GCCcore-12.2.0
spglib 2.0.2-GCCcore-12.2.0
SQLite 3.39.4-GCCcore-12.2.0
STAR 2.7.11a-GCC-12.2.0
statsmodels 0.14.0-gfbf-2022b
strucVis 0.7-foss-2022b
SuiteSparse 5.13.0-foss-2022b-METIS-5.1.0
SUNDIALS 6.6.0-foss-2022b
SWIG 4.1.1-GCCcore-12.2.0
Szip 2.1.1-GCCcore-12.2.0
tbb 2021.10.0-GCCcore-12.2.0
Tcl 8.6.12-GCCcore-12.2.0
Tk 8.6.12-GCCcore-12.2.0
Tkinter 3.10.8-GCCcore-12.2.0
tqdm 4.64.1-GCCcore-12.2.0
Trilinos 14.4.0-foss-2022b
TXR 291-GCCcore-12.2.0
UCC 1.1.0-GCCcore-12.2.0
UCX 1.13.1-GCCcore-12.2.0
UDUNITS 2.2.28-GCCcore-12.2.0
UnZip 6.0-GCCcore-12.2.0
utf8proc 2.8.0-GCCcore-12.2.0
util-linux 2.38.1-GCCcore-12.2.0
ViennaRNA 2.6.4-foss-2022b
VTK 9.2.6-foss-2022b
Wayland 1.22.0-GCCcore-12.2.0
wittgenstein 0.3.4-foss-2022b
X11 20221110-GCCcore-12.2.0
x264 20230226-GCCcore-12.2.0
x265 3.5-GCCcore-12.2.0
Xerces-C++ 3.2.4-GCCcore-12.2.0
xorg-macros 1.19.3-GCCcore-12.2.0
Xvfb 21.1.6-GCCcore-12.2.0
XZ 5.2.7-GCCcore-12.2.0
Yasm 1.3.0-GCCcore-12.2.0
ZeroMQ 4.3.4-GCCcore-12.2.0
zlib 1.2.12-GCCcore-12.2.0
zlib 1.2.12
zstd 1.5.2-GCCcore-12.2.0