HISAT2 2.2.1-gompi-2022b

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).

Accessing HISAT2 2.2.1-gompi-2022b

To load the module for HISAT2 2.2.1-gompi-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load HISAT2/2.2.1-gompi-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the HISAT2 website.

Dependencies

This version of HISAT2 has a direct dependency on: gompi/2022b ncbi-vdb/3.0.10-gompi-2022b SRA-Toolkit/3.0.10-gompi-2022b

Required By

This version of HISAT2 is a direct dependent of: RSEM/1.3.3-foss-2022b Trinity/2.15.1-foss-2022b

Other Versions

These versions of HISAT2 are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 2nd February 2024