Trinity 2.15.1-foss-2022b

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.

Accessing Trinity 2.15.1-foss-2022b

To load the module for Trinity 2.15.1-foss-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b module load Trinity/2.15.1-foss-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Trinity website.

Dependencies

This version of Trinity has a direct dependency on: ant/1.10.12-Java-11 BLAST+/2.14.0-gompi-2022b BLAT/3.7-GCC-12.2.0 Bowtie/1.3.1-GCC-12.2.0 Bowtie2/2.5.1-GCC-12.2.0 foss/2022b GATK/4.3.0.0-GCCcore-12.2.0-Java-11 GMAP-GSNAP/2023-04-20-GCC-12.2.0 HISAT2/2.2.1-gompi-2022b HTSlib/1.17-GCC-12.2.0 Java/11 Jellyfish/2.3.1-GCC-12.2.0 kallisto/0.48.0-gompi-2022b ncurses/6.3-GCCcore-12.2.0 Perl/5.36.0-GCCcore-12.2.0 picard/2.25.1-Java-11 Python/3.10.8-GCCcore-12.2.0 RSEM/1.3.3-foss-2022b Salmon/1.10.1-GCC-12.2.0 SAMtools/1.17-GCC-12.2.0 SciPy-bundle/2023.02-gfbf-2022b STAR/2.7.11a-GCC-12.2.0 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of Trinity is a direct dependent of: Trinotate/4.0.2-foss-2022b

Other Versions

These versions of Trinity are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
2.9.1-foss-2019b-Python-3.7.4	2019b
2.9.1-foss-2019b-Python-2.7.16	2019b
2.8.4-foss-2018b	2018b

Last modified on 2nd February 2024