Bowtie 1.3.1-GCC-12.2.0

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.

Accessing Bowtie 1.3.1-GCC-12.2.0

To load the module for Bowtie 1.3.1-GCC-12.2.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022b
module load Bowtie/1.3.1-GCC-12.2.0

BEAR Apps Version

2022b

Architectures

EL8-cascadelakeEL8-icelake

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Bowtie website.

Dependencies

This version of Bowtie has a direct dependency on: GCC/12.2.0 tbb/2021.10.0-GCCcore-12.2.0 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of Bowtie is a direct dependent of: RSEM/1.3.3-foss-2022b ShortStack/4.0.2-foss-2022b Trinity/2.15.1-foss-2022b

Other Versions

These versions of Bowtie are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
1.2.3-GCC-8.3.0 2019b
1.2.2-foss-2018b 2018b

Last modified on 25th October 2023