Bowtie 1.3.1-GCC-12.2.0
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.Accessing Bowtie 1.3.1-GCC-12.2.0
To load the module for Bowtie 1.3.1-GCC-12.2.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022b
module load Bowtie/1.3.1-GCC-12.2.0
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the Bowtie website.
Dependencies
This version of Bowtie has a direct dependency on: GCC/12.2.0 tbb/2021.10.0-GCCcore-12.2.0 zlib/1.2.12-GCCcore-12.2.0
Required By
This version of Bowtie is a direct dependent of: RSEM/1.3.3-foss-2022b ShortStack/4.0.2-foss-2022b Trinity/2.15.1-foss-2022b
Other Versions
These versions of Bowtie are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 1.3.1-GCC-11.3.0 | 2022a |
| 1.2.3-GCC-8.3.0 | 2019b |
| 1.2.2-foss-2018b | 2018b |
Last modified on 25th October 2023