kallisto 0.48.0-gompi-2022b

kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

Accessing kallisto 0.48.0-gompi-2022b

To load the module for kallisto 0.48.0-gompi-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load kallisto/0.48.0-gompi-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the kallisto website.

Dependencies

This version of kallisto has a direct dependency on: gompi/2022b HDF5/1.14.0-gompi-2022b HTSlib/1.17-GCC-12.2.0

Required By

This version of kallisto is a direct dependent of: Trinity/2.15.1-foss-2022b

Other Versions

These versions of kallisto are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 2nd February 2024