SAMtools 1.17-GCC-12.2.0

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Accessing SAMtools 1.17-GCC-12.2.0

To load the module for SAMtools 1.17-GCC-12.2.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load SAMtools/1.17-GCC-12.2.0

BEAR Apps Version




The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SAMtools website.


This version of SAMtools has a direct dependency on: bzip2/1.0.8-GCCcore-12.2.0 cURL/7.86.0-GCCcore-12.2.0 GCC/12.2.0 ncurses/6.3-GCCcore-12.2.0 XZ/5.2.7-GCCcore-12.2.0 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of SAMtools is a direct dependent of: AUGUSTUS/3.5.0-foss-2022b CMSeq/1.0.4-foss-2022b sequenza-utils/3.0.0-foss-2022b ShortStack/4.0.2-foss-2022b ShortTracks/1.1-foss-2022b strucVis/0.7-foss-2022b Trinity/2.15.1-foss-2022b Trinotate/4.0.2-foss-2022b

Other Versions

These versions of SAMtools are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 9th August 2023