Python 3.10.8-GCCcore-12.2.0

There is a newer install of Python

Python is a programming language that lets you work more quickly and integrate your systems more effectively.

Accessing Python 3.10.8-GCCcore-12.2.0

To load the module for Python 3.10.8-GCCcore-12.2.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load Python/3.10.8-GCCcore-12.2.0

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• alabaster 0.7.12
• appdirs 1.4.4
• asn1crypto 1.5.1
• atomicwrites 1.4.1
• attrs 22.1.0
• Babel 2.11.0
• backports.entry-points-selectable-1.2.0
• backports.functools_lru_cache 1.6.4
• bcrypt 4.0.1
• bitstring 3.1.9
• blist 1.3.6
• CacheControl 0.12.11
• cachy 0.3.0
• certifi 2022.9.24
• cffi 1.15.1
• chardet 5.0.0
• charset-normalizer-2.1.1
• cleo 1.0.0a5
• click 8.1.3
• clikit 0.6.2
• cloudpickle 2.2.0
• colorama 0.4.6
• commonmark 0.9.1
• crashtest 0.3.1
• cryptography 38.0.3
• Cython 0.29.32
• decorator 5.1.1
• distlib 0.3.6
• docopt 0.6.2
• docutils 0.19
• doit 0.36.0
• dulwich 0.20.50
• ecdsa 0.18.0
• editables 0.3
• exceptiongroup 1.0.1
• execnet 1.9.0
• filelock 3.8.0
• flit 3.8.0
• flit_core 3.8.0
• flit_scm 1.7.0
• fsspec 2022.11.0
• future 0.18.2
• glob2 0.7
• hatch_fancy_pypi_readme 22.8.0
• hatch_vcs 0.2.0
• hatchling 1.11.1
• html5lib 1.1
• idna 3.4
• imagesize 1.4.1
• importlib_metadata 5.0.0
• importlib_resources 5.10.0
• iniconfig 1.1.1
• intervaltree 3.1.0
• intreehooks 1.0
• ipaddress 1.0.23
• jaraco.classes 3.2.3
• jeepney 0.8.0
• Jinja2 3.1.2
• joblib 1.2.0
• jsonschema 4.17.0
• keyring 23.11.0
• keyrings.alt 4.2.0
• liac-arff-2.5.0
• lockfile 0.12.2
• MarkupSafe 2.1.1
• mock 4.0.3
• more-itertools-9.0.0
• msgpack 1.0.4
• netaddr 0.8.0
• netifaces 0.11.0
• packaging 21.3
• paramiko 2.12.0
• pastel 0.2.1
• pathlib2 2.3.7.post1
• pathspec 0.10.1
• pbr 5.11.0
• pexpect 4.8.0
• pip 22.3.1
• pkginfo 1.8.3
• platformdirs 2.5.3
• pluggy 1.0.0
• poetry 1.2.2
• poetry-core-1.3.2
• poetry_plugin_export 1.2.0
• pooch 1.6.0
• psutil 5.9.4
• ptyprocess 0.7.0
• py 1.11.0
• py_expression_eval 0.3.14
• pyasn1 0.4.8
• pycparser 2.21
• pycryptodome 3.17
• pydevtool 0.3.0
• Pygments 2.13.0
• pylev 1.4.0
• PyNaCl 1.5.0
• pyparsing 3.0.9
• pyrsistent 0.19.2
• pytest 7.2.0
• pytest-xdist-3.1.0
• python-dateutil-2.8.2
• pytoml 0.1.21
• pytz 2022.6
• regex 2022.10.31
• requests 2.28.1
• requests-toolbelt-0.9.1
• rich 13.1.0
• rich-click-1.6.0
• scandir 1.10.0
• SecretStorage 3.3.3
• semantic_version 2.10.0
• setuptools 63.4.3
• setuptools-rust-1.5.2
• setuptools_scm 7.0.5
• shellingham 1.5.0
• simplegeneric 0.8.1
• simplejson 3.17.6
• six 1.16.0
• snowballstemmer 2.2.0
• sortedcontainers 2.4.0
• Sphinx 5.3.0
• sphinx-bootstrap-theme-0.8.1
• sphinxcontrib-applehelp-1.0.2
• sphinxcontrib-devhelp-1.0.2
• sphinxcontrib-htmlhelp-2.0.0
• sphinxcontrib-jsmath-1.0.1
• sphinxcontrib-qthelp-1.0.3
• sphinxcontrib-serializinghtml-1.1.5
• sphinxcontrib-websupport-1.2.4
• tabulate 0.9.0
• threadpoolctl 3.1.0
• toml 0.10.2
• tomli 2.0.1
• tomli_w 1.0.0
• tomlkit 0.11.6
• typing_extensions 4.4.0
• ujson 5.5.0
• urllib3 1.26.12
• virtualenv 20.16.6
• wcwidth 0.2.5
• webencodings 0.5.1
• wheel 0.38.4
• xlrd 2.0.1
• zipfile36 0.1.3
• zipp 3.10.0

More Information

For more information visit the Python website.

Dependencies

This version of Python has a direct dependency on: binutils/2.39-GCCcore-12.2.0 bzip2/1.0.8-GCCcore-12.2.0 GCCcore/12.2.0 GMP/6.2.1-GCCcore-12.2.0 libffi/3.4.4-GCCcore-12.2.0 libreadline/8.2-GCCcore-12.2.0 ncurses/6.3-GCCcore-12.2.0 OpenSSL/1.1 SQLite/3.39.4-GCCcore-12.2.0 XZ/5.2.7-GCCcore-12.2.0 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of Python is a direct dependent of: aiohttp/3.8.5-GCCcore-12.2.0 ALAMODE/1.4.2-foss-2022b Arrow/11.0.0-gfbf-2022b ASE/3.22.1-gfbf-2022b autograd/1.6.3-foss-2022b Barracuda_Virtual_Reactor/24.0.0-GCCcore-12.2.0 bcbio-gff/0.7.0-foss-2022b BEAR-Python-MSc-Bioinformatics/2022b-foss-2022b BeautifulSoup/4.11.1-GCCcore-12.2.0 biom-format/2.1.15-foss-2022b Biopython/1.81-foss-2022b BioServices/1.11.2-foss-2022b bokeh/3.2.1-foss-2022b Boost.Python/1.81.0-GCC-12.2.0 Bowtie2/2.5.1-GCC-12.2.0 BUSCO/5.4.7-foss-2022b CASTEP/24.1-foss-2022b clinker/0.0.28-foss-2022b cma/3.3.0-foss-2022b CMSeq/1.0.4-foss-2022b coexist/0.3.2-foss-2022b cppy/1.2.1-GCCcore-12.2.0 cutadapt/4.4-GCCcore-12.2.0 Cython/3.0.8-GCCcore-12.2.0 Cython/0.29.37-GCCcore-12.2.0 dask/2023.7.1-foss-2022b dcm2bids/3.1.1-foss-2022b DendroPy/4.5.2-GCCcore-12.2.0 digitalDLSorteR/1.0.1-foss-2022b-R-4.3.1 dill/0.3.7-GCCcore-12.2.0 eggnog-mapper/2.1.11-foss-2022b expecttest/0.1.3-GCCcore-12.2.0 Fiona/1.9.2-foss-2022b Flask/2.2.3-GCCcore-12.2.0 flatbuffers-python/23.1.4-GCCcore-12.2.0 freebayes/1.3.8-foss-2022b-R-4.3.1 GATK/4.4.0.0-GCCcore-12.2.0-Java-17 GATK/4.3.0.0-GCCcore-12.2.0-Java-11 GDAL/3.6.2-foss-2022b Gdspy/1.6.13-foss-2022b geopandas/0.12.2-foss-2022b gffutils/0.12-foss-2022b GitPython/3.1.31-GCCcore-12.2.0 gmpy2/2.1.5-GCC-12.2.0 GObject-Introspection/1.74.0-GCCcore-12.2.0 gprofiler-official/1.0.0-foss-2022b graphviz/0.20.1-foss-2022b Graphviz/8.1.0-GCCcore-12.2.0 GStreamer/1.22.1-GCCcore-12.2.0 h5py/3.8.0-foss-2022b hdf5storage/0.1.19-foss-2022b hmmlearn/0.3.0-foss-2022b hypothesis/6.68.2-GCCcore-12.2.0 imageio/2.31.1-foss-2022b intermine/1.13.0-GCCcore-12.2.0 IPython/8.14.0-GCCcore-12.2.0 IRkernel/1.3.2-foss-2022b-R-4.3.1 JupyterLab/4.0.3-GCCcore-12.2.0 jupyter-server/2.7.0-GCCcore-12.2.0 Kaleido/0.2.1-GCCcore-12.2.0 kinbot/2.2.1-foss-2022b LAMMPS-MACE/20240201-foss-2022b-CUDA-12.0.0 lxml/4.9.2-GCCcore-12.2.0 MACS3/3.0.1-foss-2022b Mako/1.2.4-GCCcore-12.2.0 matplotlib/3.7.0-gfbf-2022b maturin/1.1.0-GCCcore-12.2.0 Meep/1.28.0-foss-2022b Meson/1.1.1-GCCcore-12.2.0 Meson/0.64.0-GCCcore-12.2.0 meson-python/0.13.2-GCCcore-12.2.0 meson-python/0.11.0-GCCcore-12.2.0 metagraph/0.3.6-gfbf-2022b mlxtend/0.22.0-gfbf-2022b MNE-Python/1.6.1-foss-2022b mofapy2/0.7.0-foss-2022b MPB/1.11.1-foss-2022b mpi4py/3.1.4-gompi-2022b mvlearn/0.5.0-foss-2022b netcdf4-python/1.6.3-foss-2022b networkx/3.0-gfbf-2022b NiBabel/5.2.0-gfbf-2022b Nilearn/0.10.3-gfbf-2022b NLopt/2.7.1-foss-2022b-Python NLTK/3.8.1-foss-2022b numba/0.58.1-foss-2022b OpenBabel/3.1.1-gompi-2022b OpenCV/4.8.0-foss-2022b-contrib OpenMC/0.14.0-foss-2022b OpenMEEG/2.5.7-foss-2022b openpyxl/3.1.2-GCCcore-12.2.0 Paralleltask/0.2.2-GCCcore-12.2.0 ParaView/5.11.1-foss-2022b PDM/2.5.5-GCCcore-12.2.0 pept/0.5.1-foss-2022b PETSc/3.19.2-foss-2022b PhiSpy/4.2.21-foss-2022b PhyloPhlAn/3.0.3-foss-2022b PICI-LIGGGHTS/3.8.1-foss-2022b Pillow/9.4.0-GCCcore-12.2.0 Pillow-SIMD/9.5.0-GCCcore-12.2.0 pkgconfig/1.5.5-GCCcore-12.2.0-python Platypus-Opt/1.2.0-foss-2022b plotly.py/5.13.1-GCCcore-12.2.0 polars/0.19.12-foss-2022b preCICE/2.5.0-foss-2022b protobuf-python/4.23.0-GCCcore-12.2.0 PuLP/2.7.0-foss-2022b pybedtools/0.9.0-GCC-12.2.0 pybind11/2.10.3-GCCcore-12.2.0 PyBioLib/1.1.1691-GCCcore-12.2.0 PyCairo/1.24.0-GCCcore-12.2.0 pydicom/2.4.4-GCCcore-12.2.0 pyfaidx/0.7.2.1-GCCcore-12.2.0 PyGObject/3.44.1-GCCcore-12.2.0 pyhpo/3.2.2-gfbf-2022b pyproj/3.5.0-GCCcore-12.2.0 PyQt5/5.15.7-GCCcore-12.2.0 Pysam/0.21.0-GCC-12.2.0 pytest-flakefinder/1.1.0-GCCcore-12.2.0 pytest-rerunfailures/12.0-GCCcore-12.2.0 pytest-shard/0.1.2-GCCcore-12.2.0 python-isal/1.1.0-GCCcore-12.2.0 PyTorch/1.13.1-foss-2022b PyTorch/2.1.2-foss-2022b PyTorch/2.1.2-foss-2022b-CUDA-12.0.0 PyTorch3D/0.7.5-foss-2022b-CUDA-12.0.0 PyTorch-Geometric/2.5.0-foss-2022b-PyTorch-2.1.2-CUDA-12.0.0 PyTorch-Geometric/2.5.0-foss-2022b-PyTorch-2.1.2 pyvis/0.3.1-foss-2022b pyvista/0.41.1-foss-2022b PyYAML/6.0-GCCcore-12.2.0 RDFlib/7.0.0-GCCcore-12.2.0 RDKit/2023.03.3-foss-2022b scikit-image/0.21.0-foss-2022b scikit-learn/1.2.1-gfbf-2022b scikit-plot/0.3.7-foss-2022b SciPy-bundle/2023.02-gfbf-2022b SCons/4.5.2-GCCcore-12.2.0 Seaborn/0.12.2-foss-2022b SEPP/4.5.1-foss-2022b sequenza-utils/3.0.0-foss-2022b Serialbox/2.6.1-foss-2022b setuptools/64.0.3-GCCcore-12.2.0 Shapely/2.0.1-foss-2022b ShortStack/4.0.2-foss-2022b ShortTracks/1.1-foss-2022b SignalP/6.0h-foss-2022b-fast snakemake/7.32.3-foss-2022b snakemake-wrapper-utils/0.6.2-foss-2022b snpEff/5.2c-GCCcore-12.2.0-Java-11 spglib-python/2.0.2-gfbf-2022b statsmodels/0.14.0-gfbf-2022b sympy/1.12-gfbf-2022b taxmyphage/0.2.7-foss-2022b TensorFlow/2.13.0-foss-2022b Tkinter/3.10.8-GCCcore-12.2.0 torchvision/0.16.0-foss-2022b-CUDA-12.0.0 tqdm/4.64.1-GCCcore-12.2.0 Trilinos/14.4.0-foss-2022b Trinity/2.15.1-foss-2022b Trinotate/4.0.2-foss-2022b UMI-VarCal/2.8.2-foss-2022b vcflib/1.0.9-foss-2022b-R-4.3.1 vcfstats/0.6.0-foss-2022b ViennaRNA/2.6.4-foss-2022b VTK/9.2.6-foss-2022b wittgenstein/0.3.4-foss-2022b wrapt/1.15.0-gfbf-2022b xarray/2023.4.2-gfbf-2022b XlsxWriter/3.1.2-GCCcore-12.2.0 YACS/0.1.8-GCCcore-12.2.0 Z3/4.12.2-GCCcore-12.2.0-Python-3.10.8

Other Versions

These versions of Python are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th July 2023