Python 3.8.2-GCCcore-9.3.0

There is a newer version of Python

Python is a programming language that lets you work more quickly and integrate your systems more effectively.

Accessing Python 3.8.2-GCCcore-9.3.0

To load the module for Python 3.8.2-GCCcore-9.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Python/3.8.2-GCCcore-9.3.0

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • alabaster 0.7.12
  • appdirs 1.4.3
  • asn1crypto 1.3.0
  • atomicwrites 1.3.0
  • attrs 19.3.0
  • Babel 2.8.0
  • bcrypt 3.1.7
  • bitstring 3.1.6
  • blist 1.3.6
  • certifi 2020.4.5.1
  • cffi 1.14.0
  • chardet 3.0.4
  • click 7.1.1
  • cryptography 2.9.2
  • Cython 0.29.16
  • decorator 4.4.2
  • distlib 0.3.0
  • docopt 0.6.2
  • docutils 0.16
  • ecdsa 0.15
  • filelock 3.0.12
  • future 0.18.2
  • idna 2.9
  • imagesize 1.2.0
  • importlib_metadata 1.6.0
  • ipaddress 1.0.23
  • Jinja2 2.11.2
  • joblib 0.14.1
  • liac-arff-2.4.0
  • MarkupSafe 1.1.1
  • mock 4.0.1
  • more-itertools-8.2.0
  • netaddr 0.7.19
  • netifaces 0.10.9
  • nose 1.3.7
  • packaging 20.3
  • paramiko 2.7.1
  • pathlib2 2.3.5
  • paycheck 1.0.2
  • pbr 5.4.5
  • pip 20.0.2
  • pluggy 0.13.1
  • psutil 5.7.0
  • py 1.8.1
  • py_expression_eval 0.3.9
  • pyasn1 0.4.8
  • pycparser 2.20
  • pycrypto 2.6.1
  • Pygments 2.5.2
  • PyNaCl 1.3.0
  • pyparsing 2.4.7
  • pytest 5.4.1
  • python-dateutil-2.8.1
  • pytz 2019.3
  • requests 2.23.0
  • scandir 1.10.0
  • setuptools 45.2.0
  • setuptools_scm 3.5.0
  • six 1.14.0
  • snowballstemmer 2.0.0
  • Sphinx 3.0.2
  • sphinxcontrib-applehelp-1.0.2
  • sphinxcontrib-devhelp-1.0.2
  • sphinxcontrib-htmlhelp-1.0.3
  • sphinxcontrib-jsmath-1.0.1
  • sphinxcontrib-qthelp-1.0.3
  • sphinxcontrib-serializinghtml-1.1.4
  • sphinxcontrib-websupport-1.2.1
  • tabulate 0.8.7
  • toml 0.10.0
  • ujson 2.0.3
  • urllib3 1.25.9
  • virtualenv 20.0.18
  • wcwidth 0.1.9
  • wheel 0.34.2
  • xlrd 1.2.0
  • zipp 1.2.0

More Information

For more information visit the Python website.

Dependencies

This version of Python has a direct dependency on: binutils/2.34-GCCcore-9.3.0 bzip2/1.0.8-GCCcore-9.3.0 GCCcore/9.3.0 GMP/6.2.0-GCCcore-9.3.0 libffi/3.3-GCCcore-9.3.0 libreadline/8.0-GCCcore-9.3.0 ncurses/6.2-GCCcore-9.3.0 SQLite/3.31.1-GCCcore-9.3.0 XZ/5.2.5-GCCcore-9.3.0 zlib/1.2.11-GCCcore-9.3.0

Required By

This version of Python is a direct dependent of: Amber/20.9-AmberTools-20.14-fosscuda-2020a-Python-3.8.2 Amber/20.9-AmberTools-20.14-foss-2020a-Python-3.8.2 Amber/20.13-AmberTools-21.12-fosscuda-2020a-Python-3.8.2 Amber/20.13-AmberTools-21.12-foss-2020a-Python-3.8.2 archspec/0.1.0-GCCcore-9.3.0-Python-3.8.2 astropy/4.0-foss-2020a-Python-3.8.2 autograd/1.3-foss-2020a-Python-3.8.2 Barracuda_Virtual_Reactor/20.1.0-GCCcore-9.3.0-Python-3.8.2 BEAR-Python-DataScience/2020a-foss-2020a-Python-3.8.2 BEAR-Python-MSc-Bioinformatics/2020a-foss-2020a-Python-3.8.2 BeautifulSoup/4.9.1-GCCcore-9.3.0-Python-3.8.2 Biopython/1.78-foss-2020a-Python-3.8.2 BioServices/1.7.9-foss-2020a-Python-3.8.2 bokeh/2.0.2-foss-2020a-Python-3.8.2 bokeh/2.0.2-fosscuda-2020a-Python-3.8.2 Boost.Python/1.72.0-gompi-2020a Boost.Python/1.72.0-gompic-2020a CGAL/4.14.3-gompi-2020a-Python-3.8.2 clust/1.12.0-foss-2020a-Python-3.8.2 CNVkit/0.9.8-foss-2020a-Python-3.8.2-R-4.0.0 dask/2.18.1-foss-2020a-Python-3.8.2 dask/2.18.1-fosscuda-2020a-Python-3.8.2 deepTools/3.5.0-foss-2020a-Python-3.8.2 dm-tree/0.1.6-GCCcore-9.3.0-Python-3.8.2 DROP/1.0.3-foss-2020a-Python-3.8.2-R-4.0.0 eccodes-python/1.2.0-foss-2020a-Python-3.8.2 GATK/4.1.5.0-GCCcore-9.3.0-Java-11 GDAL/3.0.4-foss-2020a-Python-3.8.2 gensim/4.0.1-foss-2020a-Python-3.8.2 GEOS/3.8.1-GCC-9.3.0-Python-3.8.2 GitPython/3.1.9-GCCcore-9.3.0-Python-3.8.2 gmpy2/2.1.0b5-GCC-9.3.0 gmsh/4.7.1-foss-2020a-Python-3.8.2 GObject-Introspection/1.64.0-GCCcore-9.3.0-Python-3.8.2 gprofiler-official/1.0.0-foss-2020a-Python-3.8.2 graphviz/0.14.2-foss-2020a-Python-3.8.2 GROMACS/2021.2-fosscuda-2020a-Python-3.8.2 gwpv/0.2.0-foss-2020a-Python-3.8.2 h5py/2.10.0-fosscuda-2020a-Python-3.8.2 h5py/2.10.0-foss-2020a-Python-3.8.2 Horovod/0.21.1-fosscuda-2020a-TensorFlow-2.3.1-Python-3.8.2 HTSeq/0.13.5-foss-2020a-Python-3.8.2 intermine/1.11.0-GCCcore-9.3.0-Python-3.8.2 IPython/7.13.0-fosscuda-2020a-Python-3.8.2 IPython/7.13.0-foss-2020a-Python-3.8.2 IRkernel/1.1-foss-2020a-R-4.0.0-Python-3.8.2 iterativeWGCNA/1.1.6-foss-2020a-Python-3.8.2-R-4.0.0 JupyterLab/2.2.8-foss-2020a-Python-3.8.2 kmodes/0.11.0-foss-2020a-Python-3.8.2 LAMMPS/3Mar2020-fosscuda-2020a-Python-3.8.2-kokkos LAMMPS/29Oct2020-fosscuda-2020a-Python-3.8.2-kokkos LAMMPS/29Oct2020-foss-2020a-Python-3.8.2-kokkos LAMMPS/3Mar2020-foss-2020a-Python-3.8.2-kokkos lxml/4.5.2-GCCcore-9.3.0 MACS2/2.2.7.1-foss-2020a-Python-3.8.2 MAJIQ/2.2-foss-2020a-54fd98d-Python-3.8.2 Mako/1.1.2-GCCcore-9.3.0 matplotlib/3.2.1-foss-2020a-Python-3.8.2 matplotlib/3.2.1-fosscuda-2020a-Python-3.8.2 Meep/1.17.1-foss-2020a-Python-3.8.2 Meson/0.53.2-GCCcore-9.3.0-Python-3.8.2 MIRTK/20210104-fosscuda-2020a-Python-3.8.2 MIRTK/20210104-foss-2020a-Python-3.8.2 mlxtend/0.17.3-foss-2020a-Python-3.8.2 molmod/1.4.5-foss-2020a-Python-3.8.2 molmod/1.4.5-fosscuda-2020a-Python-3.8.2 MPB/1.11.1-foss-2020a-Python-3.8.2 netcdf4-python/1.5.3-foss-2020a-Python-3.8.2 networkx/2.4-fosscuda-2020a-Python-3.8.2 networkx/2.4-foss-2020a-Python-3.8.2 NiBabel/3.2.1-foss-2020a-Python-3.8.2 NiBabel/3.2.1-fosscuda-2020a-Python-3.8.2 NLopt/2.6.1-foss-2020a-Python-3.8.2 NLTK/3.6.7-foss-2020a-Python-3.8.2 numba/0.50.0-foss-2020a-Python-3.8.2 OpenCV/4.4.0-foss-2020a-Python-3.8.2 OpenCV/4.4.0-fosscuda-2020a-Python-3.8.2 ParaView/5.8.0-foss-2020a-Python-3.8.2-mpi-offscreen pept/0.3.2-foss-2020a-Python-3.8.2 pept/0.2.4-foss-2020a-Python-3.8.2 PETSc/3.12.4-foss-2020a-Python-3.8.2 PHATE/1.0.7-foss-2020a-Python-3.8.2 phateR/1.0.7-foss-2020a-R-4.0.0-Python-3.8.2 PICI-LIGGGHTS/20210424-foss-2020a-Python-3.8.2 PICI-LIGGGHTS/20210202-foss-2020a-Python-3.8.2 Pillow/7.0.0-GCCcore-9.3.0-Python-3.8.2 pkgconfig/1.5.1-GCCcore-9.3.0-Python-3.8.2 plotly.py/4.8.1-GCCcore-9.3.0 PLUMED/2.6.0-foss-2020a-Python-3.8.2 PLUMED/2.6.0-fosscuda-2020a-Python-3.8.2 protobuf-python/3.17.3-fosscuda-2020a-Python-3.8.2 protobuf-python/3.13.0-fosscuda-2020a-Python-3.8.2 protobuf-python/3.13.0-foss-2020a-Python-3.8.2 pybind11/2.4.3-GCCcore-9.3.0-Python-3.8.2 pydicom/2.1.2-GCCcore-9.3.0-Python-3.8.2 pygrib/2.1.3-foss-2020a-Python-3.8.2 pyhpo/2.5.0-foss-2020a-Python-3.8.2 PyMC3/3.8-foss-2020a-Python-3.8.2 pyproj/2.6.1.post1-GCCcore-9.3.0-Python-3.8.2 PyQt5/5.15.1-GCCcore-9.3.0-Python-3.8.2 Pysam/0.16.0.1-GCC-9.3.0 python-bioformats/4.0.0-foss-2020a-Python-3.8.2 PyYAML/5.3-GCCcore-9.3.0 Ray-project/1.4.0-fosscuda-2020a-Python-3.8.2 refnx/0.1.19-foss-2020a-Python-3.8.2 RGT/0.13.2-foss-2020a-Python-3.8.2 ROOT/6.24.06-foss-2020a-Python-3.8.2 rpy2/3.3.6-foss-2020a-Python-3.8.2 scikit-build/0.10.0-fosscuda-2020a-Python-3.8.2 scikit-image/0.17.1-foss-2020a-Python-3.8.2 scikit-image/0.17.1-fosscuda-2020a-Python-3.8.2 scikit-learn/0.23.2-foss-2020a-Python-3.8.2 scikit-plot/0.3.7-foss-2020a-Python-3.8.2 SciPy-bundle/2020.03-fosscuda-2020a-Python-3.8.2 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 Seaborn/0.11.0-foss-2020a-Python-3.8.2 sequenza-utils/3.0.0-foss-2020a-Python-3.8.2-R-4.0.0 sf/0.9-5-foss-2020a-R-4.0.0-Python-3.8.2 SICER2/1.0.3-foss-2020a-Python-3.8.2 SLEPc/3.12.2-foss-2020a-Python-3.8.2 snakemake/5.31.1-foss-2020a-Python-3.8.2 SPAdes/3.14.1-GCC-9.3.0-Python-3.8.2 spdep/1.1-5-foss-2020a-R-4.0.0-Python-3.8.2 statsmodels/0.11.1-foss-2020a-Python-3.8.2 sympy/1.6.2-foss-2020a-Python-3.8.2 TensorFlow/2.3.1-fosscuda-2020a-Python-3.8.2 TensorFlow/2.3.1-foss-2020a-Python-3.8.2 TensorFlow_Addons/0.11.2-foss-2020a-Python-3.8.2 TensorFlow_Addons/0.11.2-fosscuda-2020a-Python-3.8.2 Theano/1.0.4-foss-2020a-Python-3.8.2 Tkinter/3.8.2-GCCcore-9.3.0 tqdm/4.47.0-GCCcore-9.3.0 VTK/8.2.0-fosscuda-2020a-Python-3.8.2 VTK/8.2.0-foss-2020a-Python-3.8.2 wittgenstein/0.2.3-foss-2020a-Python-3.8.2 xarray/0.16.1-foss-2020a-Python-3.8.2 yaff/1.6.0-fosscuda-2020a-Python-3.8.2 yaff/1.6.0-foss-2020a-Python-3.8.2

Other Versions

These versions of Python are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 29th May 2020