sequenza-utils 3.0.0-foss-2020a-Python-3.8.2-R-4.0.0
There is a newer install of sequenza-utils
Sequenza-utils is The supporting python library for the sequenza R package. Sequenza is a software for the estimation and quantification of purity/ploidy and copy number alteration in sequencing experiments of tumor samples. Sequenza-utils provide command lines programs to transform common NGS file format - such as BAM, pileup and VCF - to input files for the R package.Accessing sequenza-utils 3.0.0-foss-2020a-Python-3.8.2-R-4.0.0
To load the module for sequenza-utils 3.0.0-foss-2020a-Python-3.8.2-R-4.0.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load sequenza-utils/3.0.0-foss-2020a-Python-3.8.2-R-4.0.0
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the sequenza-utils website.
Dependencies
This version of sequenza-utils has a direct dependency on: foss/2020a HTSlib/1.10.2-GCC-9.3.0 Python/3.8.2-GCCcore-9.3.0 R/4.0.0-foss-2020a SAMtools/1.10-GCC-9.3.0 sequenza/3.0.0-foss-2020a-R-4.0.0
Required By
This version of sequenza-utils is a direct dependent of: BEAR-Python-MSc-Bioinformatics/2020a-foss-2020a-Python-3.8.2
Other Versions
These versions of sequenza-utils are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 3.0.0-foss-2022b | 2022b |
| 3.0.0-foss-2021b-MSc | 2021b |
| 3.0.0-foss-2021b | 2021b |
Last modified on 2nd June 2021