sequenza 3.0.0-foss-2020a-R-4.0.0

There is a newer install of sequenza

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Accessing sequenza 3.0.0-foss-2020a-R-4.0.0

To load the module for sequenza 3.0.0-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load sequenza/3.0.0-foss-2020a-R-4.0.0

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• copynumber 1.28.0
• iotools-0.3-1
• iotools-0.3-1
• seqminer 8.0
• sequenza 3.0.0
• squash 1.0.9

More Information

For more information visit the sequenza website.

Dependencies

This version of sequenza has a direct dependency on: foss/2020a Pandoc/2.10 R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0

Required By

This version of sequenza is a direct dependent of: sequenza-utils/3.0.0-foss-2020a-Python-3.8.2-R-4.0.0

Other Versions

These versions of sequenza are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 2nd June 2021