sequenza 3.0.0-foss-2020a-R-4.0.0
There is a newer install of sequenza
Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.Accessing sequenza 3.0.0-foss-2020a-R-4.0.0
To load the module for sequenza 3.0.0-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load sequenza/3.0.0-foss-2020a-R-4.0.0
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- copynumber 1.28.0
- iotools-0.3-1
- iotools-0.3-1
- seqminer 8.0
- sequenza 3.0.0
- squash 1.0.9
More Information
For more information visit the sequenza website.
Dependencies
This version of sequenza has a direct dependency on: foss/2020a Pandoc/2.10 R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
Required By
This version of sequenza is a direct dependent of: sequenza-utils/3.0.0-foss-2020a-Python-3.8.2-R-4.0.0
Other Versions
These versions of sequenza are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
3.0.0-foss-2022b | 2022b |
3.0.0-foss-2021b-MSc | 2021b |
3.0.0-foss-2021b | 2021b |
Last modified on 2nd June 2021