sequenza 3.0.0-foss-2022b
Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.Accessing sequenza 3.0.0-foss-2022b
To load the module for sequenza 3.0.0-foss-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022b
module load sequenza/3.0.0-foss-2022b
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- copynumber 1.36.0
- iotools-0.3-2
- seqminer 8.4
- sequenza 3.0.0
- squash 1.0.9
More Information
For more information visit the sequenza website.
Dependencies
This version of sequenza has a direct dependency on: foss/2022b Pandoc/2.13 R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1
Required By
This version of sequenza is a direct dependent of: sequenza-utils/3.0.0-foss-2022b
Other Versions
These versions of sequenza are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 3.0.0-foss-2021b-MSc | 2021b |
| 3.0.0-foss-2021b | 2021b |
| 3.0.0-foss-2020a-R-4.0.0 | 2020a |
Last modified on 9th August 2023