foss 2020a

There is a newer version of foss

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

Accessing foss 2020a

To load the module for foss 2020a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load foss/2020a

BEAR Apps Version

2020a

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the foss website.

Dependencies

This version of foss has a direct dependency on: FFTW/3.3.8-gompi-2020a GCC/9.3.0 OpenBLAS/0.3.9-GCC-9.3.0 OpenMPI/4.0.5-GCC-9.3.0 ScaLAPACK/2.1.0-gompi-2020a

Required By

This version of foss is a direct dependent of: AdmixTools/7.0.2-foss-2020a-R-4.0.0-Perl-5.30.2 ald/1.2-foss-2020a-R-4.0.0 Amber/20.13-AmberTools-21.12-foss-2020a-Python-3.8.2 Amber/20.9-AmberTools-20.14-foss-2020a-Python-3.8.2 Armadillo/9.900.1-foss-2020a arpack-ng/3.7.0-foss-2020a astropy/4.0-foss-2020a-Python-3.8.2 autograd/1.3-foss-2020a-Python-3.8.2 BEAR-Python-DataScience/2020a-foss-2020a-Python-3.8.2 BEAR-Python-MSc-Bioinformatics/2020a-foss-2020a-Python-3.8.2 BEAR-R-bio/2020a-foss-2020a-R-4.0.0 BEAR-R-economics/2020a-foss-2020a-R-4.0.0 betapart/1.5.2-foss-2020a-R-4.0.0 bigsnpr/1.8.1-foss-2020a-R-4.0.0 bigsnpr/1.6.1-foss-2020a-R-4.0.0 Biopython/1.78-foss-2020a-Python-3.8.2 BioServices/1.7.9-foss-2020a-Python-3.8.2 bokeh/2.0.2-foss-2020a-Python-3.8.2 BWA/0.7.17-foss-2020a Cardinal/2.6.0-foss-2020a-R-4.0.0 CellChat/20210814-foss-2020a-R-4.0.0 clust/1.12.0-foss-2020a-Python-3.8.2 CNVkit/0.9.8-foss-2020a-Python-3.8.2-R-4.0.0 dask/2.18.1-foss-2020a-Python-3.8.2 dbscan/1.1-8-foss-2020a-R-4.0.0 deepTools/3.5.0-foss-2020a-Python-3.8.2 DirichletMultinomial/1.32.0-foss-2020a-R-4.0.0 DivNet/31e04e2-foss-2020a-R-4.0.0 DL_MESO/2.7-foss-2020a DL_POLY/4.10.0-foss-2020a doFuture/0.10.0-foss-2020a-R-4.0.0 DROP/1.0.3-foss-2020a-Python-3.8.2-R-4.0.0 DualSPHysics/5.0.164-foss-2020a-Java-11 ecCodes/2.20.0-foss-2020a eccodes-python/1.2.0-foss-2020a-Python-3.8.2 EIGENSOFT/7.2.1-foss-2020a EnhancedVolcano/1.6.0-foss-2020a-R-4.0.0 ESMF/8.0.1-foss-2020a faahKO/1.28.0-foss-2020a-R-4.0.0 factoextra/1.0.7-foss-2020a-R-4.0.0 fastStructure/1.0-foss-2020a-Python-2.7.18 fmi2/0.2.0-foss-2020a-R-4.0.0 furrr/0.2.1-foss-2020a-R-4.0.0 gambin/2.4.4-foss-2020a-R-4.0.0 GATE/9.1-foss-2020a-Python-3.8.2 GDAL/3.0.4-foss-2020a-Python-3.8.2 gdm/1.4.2-foss-2020a-R-4.0.0 gensim/4.0.1-foss-2020a-Python-3.8.2 geosphere/1.5-10-foss-2020a-R-4.0.0 ggvenn/0.1.8-foss-2020a-R-4.0.0 gmsh/4.7.1-foss-2020a-Python-3.8.2 GPArotation/2014.11-1-foss-2020a-R-4.0.0 gprofiler-official/1.0.0-foss-2020a-Python-3.8.2 Graphviz/2.44.1-foss-2020a graphviz/0.14.2-foss-2020a-Python-3.8.2 GTS/0.7.6-foss-2020a gwpv/0.2.0-foss-2020a-Python-3.8.2 h5py/2.10.0-foss-2020a-Python-3.8.2 Harminv/1.4.1-foss-2020a HOMER/4.11-foss-2020a HPL/2.3-foss-2020a HTSeq/0.13.5-foss-2020a-Python-3.8.2 Hypre/2.18.2-foss-2020a IPython/7.13.0-foss-2020a-Python-3.8.2 iRF/3.0.0-foss-2020a-R-4.0.0 IRkernel/1.1-foss-2020a-R-4.0.0-Python-3.8.2 iterativeWGCNA/1.1.6-foss-2020a-Python-3.8.2-R-4.0.0 JAGS/4.3.0-foss-2020a JupyterLab/2.2.8-foss-2020a-Python-3.8.2 kim-api/2.1.3-foss-2020a kinship2/1.8.5-foss-2020a-R-4.0.0 kmodes/0.11.0-foss-2020a-Python-3.8.2 LAMMPS/3Mar2020-foss-2020a-Python-3.8.2-kokkos LAMMPS/29Oct2020-foss-2020a-Python-3.8.2-kokkos leafcutter/0.2.9-foss-2020a-R-4.0.0-Python-2.7.18 LIGGGHTS/3.8.0-foss-2020a LoFreq/2.1.5-foss-2020a-Python-2.7.18 M3C/1.10.0-foss-2020a-R-4.0.0 MACS2/2.2.7.1-foss-2020a-Python-3.8.2 MAJIQ/2.2-foss-2020a-54fd98d-Python-3.8.2 Mash/2.3-foss-2020a Mashtree/1.2.0-foss-2020a-Perl-5.30.2 mass2adduct/20210609-foss-2020a-R-4.0.0 MAST/1.14.0-foss-2020a-R-4.0.0 matplotlib/3.2.1-foss-2020a-Python-3.8.2 matplotlib/2.2.5-foss-2020a-Python-2.7.18 mcclust/1.0-foss-2020a-R-4.0.0 mddnmr/2.7-foss-2020a-Python-2.7.18 Meep/1.17.1-foss-2020a-Python-3.8.2 microbenchmark/1.4.9-foss-2020a-R-4.0.0 MIRTK/20210104-foss-2020a-Python-3.8.2 mlxtend/0.17.3-foss-2020a-Python-3.8.2 molmod/1.4.5-foss-2020a-Python-3.8.2 MPB/1.11.1-foss-2020a-Python-3.8.2 MrBayes/3.2.7a-foss-2020a MUMPS/5.2.1-foss-2020a-metis ncdf4/1.17-foss-2020a-R-4.0.0 NCO/4.9.7-foss-2020a Neper/4.4.2-29-foss-2020a Neper/4.4.1-foss-2020a netcdf4-python/1.5.3-foss-2020a-Python-3.8.2 networkx/2.4-foss-2020a-Python-3.8.2 NiBabel/3.2.1-foss-2020a-Python-3.8.2 NLopt/2.6.1-foss-2020a-Python-3.8.2 NLTK/3.6.7-foss-2020a-Python-3.8.2 NMRPipe/20022021-foss-2020a numba/0.50.0-foss-2020a-Python-3.8.2 OpenCV/4.4.0-foss-2020a-Python-3.8.2 OpenFOAM (OpenCFD Ltd)/v2012-foss-2020a OpenFOAM (The OpenFOAM Foundation)/8-foss-2020a ottr/1.0.0-foss-2020a-R-4.0.0 p4est/2.3.2-foss-2020a pander/0.6.4-foss-2020a-R-4.0.0 ParaView/5.8.0-foss-2020a-Python-3.8.2-mpi-offscreen PCAmixdata/3.1-foss-2020a-R-4.0.0 pept/0.3.2-foss-2020a-Python-3.8.2 pept/0.2.4-foss-2020a-Python-3.8.2 PETSc/3.12.4-foss-2020a-Python-3.8.2 PHATE/1.0.7-foss-2020a-Python-3.8.2 phateR/1.0.7-foss-2020a-R-4.0.0-Python-3.8.2 PICI-LIGGGHTS/20210202-foss-2020a-Python-3.8.2 PICI-LIGGGHTS/20210424-foss-2020a-Python-3.8.2 PLUMED/2.6.0-foss-2020a-Python-3.8.2 PReMiuM/3.2.3-foss-2020a-R-4.0.0 profvis/0.3.7-foss-2020a-R-4.0.0 protobuf-python/3.13.0-foss-2020a-Python-3.8.2 PRROC/1.3.1-foss-2020a-R-4.0.0 pygrib/2.1.3-foss-2020a-Python-3.8.2 pyhpo/2.5.0-foss-2020a-Python-3.8.2 PyMC3/3.8-foss-2020a-Python-3.8.2 python-bioformats/4.0.0-foss-2020a-Python-3.8.2 qqman/0.1.8-foss-2020a-R-4.0.0 qtl2/0.28-foss-2020a-R-4.0.0 R/4.0.0-foss-2020a RAPID/fcd9e9b-foss-2020a-R-4.0.0 R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0 RcisTarget/1.8.0-foss-2020a-R-4.0.0 RcppAnnoy/0.0.19-foss-2020a-R-4.0.0 refnx/0.1.19-foss-2020a-Python-3.8.2 regtools/0.5.2-foss-2020a rethinking/2.13-foss-2020a-R-4.0.0 rgdal/1.5-16-foss-2020a-R-4.0.0 RGT/0.13.2-foss-2020a-Python-3.8.2 rjags/4-10-foss-2020a-R-4.0.0 Roary/3.13.0-foss-2020a ROOT/6.24.06-foss-2020a-Python-3.8.2 Rphenoannoy/20210906-foss-2020a-R-4.0.0 Rphenograph/20210906-foss-2020a-R-4.0.0 rpy2/3.3.6-foss-2020a-Python-3.8.2 RStata/1.1.1-foss-2020a-R-4.0.0 rstudio/1.3.959-foss-2020a-Java-11-R-4.0.0 rstudio/1.2.5042-foss-2020a-Java-11-R-4.0.0 sars/1.2.3-foss-2020a-R-4.0.0 ScaFaCoS/1.0.1-foss-2020a scCATCH/2.1-foss-2020a-R-4.0.0 scikit-image/0.17.1-foss-2020a-Python-3.8.2 scikit-learn/0.23.2-foss-2020a-Python-3.8.2 scikit-plot/0.3.7-foss-2020a-Python-3.8.2 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 SciPy-bundle/2020.03-foss-2020a-Python-2.7.18 Seaborn/0.11.0-foss-2020a-Python-3.8.2 sequenza/3.0.0-foss-2020a-R-4.0.0 sequenza-utils/3.0.0-foss-2020a-Python-3.8.2-R-4.0.0 Seurat/4.0.0-foss-2020a-R-4.0.0 SeuratDisk/0.0.0.9018-foss-2020a-R-4.0.0 sf/0.9-5-foss-2020a-R-4.0.0-Python-3.8.2 SICER2/1.0.3-foss-2020a-Python-3.8.2 SLEPc/3.12.2-foss-2020a-Python-3.8.2 slingshot/1.6.1-foss-2020a-R-4.0.0 snakemake/5.31.1-foss-2020a-Python-3.8.2 spatialRF/54214cc-foss-2020a-R-4.0.0 spdep/1.1-5-foss-2020a-R-4.0.0-Python-3.8.2 SRAdb/1.50.0-foss-2020a-R-4.0.0 statsmodels/0.11.1-foss-2020a-Python-3.8.2 structToolbox/1.0.1-foss-2020a-R-4.0.0 SuiteSparse/5.7.1-foss-2020a-METIS-5.1.0 sympy/1.6.2-foss-2020a-Python-3.8.2 TensorFlow/2.3.1-foss-2020a-Python-3.8.2 TensorFlow_Addons/0.11.2-foss-2020a-Python-3.8.2 Theano/1.0.4-foss-2020a-Python-3.8.2 tidymodels/0.1.0-foss-2020a-R-4.0.0 VTK/8.2.0-foss-2020a-Python-3.8.2 WGCNA/1.70-3-foss-2020a-R-4.0.0 wittgenstein/0.2.3-foss-2020a-Python-3.8.2 WPS/3.9.1-foss-2020a-dmpar WRF/3.9.1.1-foss-2020a-dmpar xarray/0.16.1-foss-2020a-Python-3.8.2 xterm/366-foss-2020a yaff/1.6.0-foss-2020a-Python-3.8.2

Other Versions

These versions of foss are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 29th May 2020