foss 2021b

There is a newer version of foss

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

Accessing foss 2021b

To load the module for foss 2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load foss/2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelakeEL8-haswellEL8-icelakeUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the foss website.

Dependencies

This version of foss has a direct dependency on: FFTW/3.3.10-gompi-2021b FlexiBLAS/3.0.4-GCC-11.2.0 GCC/11.2.0 OpenMPI/4.1.1-GCC-11.2.0 ScaLAPACK/2.1.0-gompi-2021b-fb

Required By

This version of foss is a direct dependent of: adjustText/0.7.3-foss-2021b arpack-ng/3.8.0-foss-2021b Arrow/6.0.0-foss-2021b arrow-R/6.0.0.2-foss-2021b-R-4.2.0 arrow-R/6.0.0.2-foss-2021b-R-4.1.2 ArviZ/0.11.4-foss-2021b astropy/5.0.4-foss-2021b autograd/1.5-foss-2021b awscli/2.9.4-foss-2021b BAT/2.9.2-foss-2021b-R-4.2.0 bcbio-gff/0.6.9-foss-2021b BEAR-Python-MSc-Bioinformatics/2021b-foss-2021b BEAR-R-bio/2021b-foss-2021b-R-4.2.0 betapart/1.5.6-foss-2021b-R-4.2.0 BIOMASS/2.1.8-foss-2021b-R-4.2.0 biom-format/2.1.12-foss-2021b Biopython/1.79-foss-2021b BioServices/1.10.1-foss-2021b Bisbee/20210108-foss-2021b-R-4.2.0 bokeh/2.4.2-foss-2021b bx-python/0.8.13-foss-2021b canopus_treemap/0.0.1-foss-2021b Cartopy/0.20.3-foss-2021b CASTEP/22.11-foss-2021b CellChat/1.6.0-foss-2021b-R-4.2.0 celldex/1.6.0-foss-2021b-R-4.2.0 CIRI-long/1.1.0-foss-2021b clusterProfiler/4.4.4-foss-2021b-R-4.2.0 cma/3.2.2-foss-2021b CMSeq/1.0.4-foss-2021b corner/2.2.1-foss-2021b CP2K/2023.1-foss-2021b-CUDA-11.4.1 CP2K/2023.1-foss-2021b cyCombine/0.2.15-foss-2021b-R-4.2.0 DCC/0.5.0-foss-2021b DRAM/1.3.6-foss-2021b ecc_finder/1.0.0_20221007_67d06f3-foss-2021b ELPA/2021.05.001-foss-2021b emcee/3.1.3-foss-2021b FastPG/0.0.8-foss-2021b-R-4.2.0 Fiona/1.8.21-foss-2021b flowVS/1.28.0-foss-2021b-R-4.2.0 GDAL/3.3.2-foss-2021b gdm/1.5.0-3-foss-2021b-R-4.2.0 Gdspy/1.6.12-foss-2021b ggfortify/0.4.14-foss-2021b-R-4.2.0 gprofiler-official/1.0.0-foss-2021b Grace/5.1.25-foss-2021b graphviz/0.20.1-foss-2021b GRASS/8.2.0-foss-2021b h5py/3.6.0-foss-2021b Harminv/1.4.1-foss-2021b HDBSCAN/0.8.29-foss-2021b HPL/2.3-foss-2021b HTSeq/0.11.3-foss-2021b hypervolume/3.1.0-foss-2021b-R-4.2.0 icellnet/1.0-foss-2021b-R-4.2.0 igraph/0.9.5-foss-2021b imageio/2.13.5-foss-2021b inferCNV/1.12.0-foss-2021b-R-4.2.0 ioh/0.3.2.8.3-foss-2021b IRkernel/1.3-foss-2021b-R-4.2.0 JAGS/4.3.0-foss-2021b jax/0.3.13-foss-2021b-CUDA-11.4.1 jax/0.3.13-foss-2021b LAMMPS/23Jun2022-foss-2021b-kokkos-CUDA-11.4.1 LAMMPS/23Jun2022-foss-2021b-kokkos leidenalg/0.8.8-foss-2021b lightkurve/2.3.0-foss-2021b maftools/2.12.0-foss-2021b-R-4.2.0 matplotlib/3.4.3-foss-2021b Meep/1.25.0-foss-2021b MetaboLabPy/0.8.4-foss-2021b MetaPhlAn/3.0.14-foss-2021b methylartist/1.2.6-foss-2021b Micro-Manager/1.4.24-foss-2021b mlxtend/0.19.0-foss-2021b MNE-Python/1.1.1-foss-2021b monocle/2.24.1-foss-2021b-R-4.2.0 MPB/1.11.1-foss-2021b msPurity/1.22.0-foss-2021b-R-4.2.0 NanoFilt/2.8.0-foss-2021b netcdf4-python/1.5.7-foss-2021b networkx/2.6.3-foss-2021b NiBabel/3.2.2-foss-2021b nichenetr/20220911-foss-2021b-R-4.2.0 NLTK/3.7-foss-2021b numba/0.54.1-foss-2021b numpyro/0.9.2-foss-2021b-CUDA-11.4.1 numpyro/0.9.2-foss-2021b OpenCV/4.5.5-foss-2021b-contrib OpenFOAM (OpenCFD Ltd)/v2206-foss-2021b Optuna/2.10.0-foss-2021b ottr/1.2.0-foss-2021b-R-4.2.0 ParaView/5.9.1-foss-2021b-mpi pbjam/1.0.0-foss-2021b PhitestR/0.2.0-foss-2021b-R-4.2.0 PhyloPhlAn/3.0.2-foss-2021b picante/1.8.2-foss-2021b-R-4.2.0 PLUMED/2.8.0-foss-2021b PLUMED/2.7.3-foss-2021b pyBigWig/0.3.18-foss-2021b PyEnsembl/2.0.1-foss-2021b pyhpo/3.1.2-foss-2021b PyMC3/3.11.1-foss-2021b pymoo/0.6.0-foss-2021b PyTables/3.6.1-foss-2021b python-igraph/0.9.8-foss-2021b python-Levenshtein/0.12.2-foss-2021b QGIS/3.28.1-foss-2021b QuantumESPRESSO/7.0-foss-2021b R/4.2.0-foss-2021b R/4.1.2-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0 R-bundle-Bioconductor/3.14-foss-2021b-R-4.1.2 rjags/4-13-foss-2021b-R-4.2.0 rpy2/3.4.5-foss-2021b RStudio-Server/1.4.1717-foss-2021b-Java-11-R-4.2.0 sars/1.3.6-foss-2021b-R-4.2.0 ScaFaCoS/1.0.1-foss-2021b scanpy/1.8.2-foss-2021b scCODA/0.1.8-foss-2021b scikit-bio/0.5.7-foss-2021b scikit-learn/1.0.1-foss-2021b scikit-plot/0.3.7-foss-2021b SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b SEPP/4.5.1-foss-2021b sequenza/3.0.0-foss-2021b sequenza-utils/3.0.0-foss-2021b Shapely/1.8.2-foss-2021b SpaTalk/1.0-foss-2021b-R-4.2.0 SplAdder/3.0.3-foss-2021b statsmodels/0.13.1-foss-2021b SuiteSparse/5.10.1-foss-2021b-METIS-5.1.0 TensorFlow/2.8.4-foss-2021b TensorFlow/2.7.1-foss-2021b tensorflow-probability/0.16.0-foss-2021b Theano/1.1.2-foss-2021b-PyMC TOBIAS/0.13.3-foss-2021b VTK/9.1.0-foss-2021b wittgenstein/0.3.2-foss-2021b wxPython/4.2.0-foss-2021b xarray/0.20.1-foss-2021b

Other Versions

These versions of foss are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 25th May 2022