foss 2021b

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

Accessing foss 2021b

To load the module for foss 2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load foss/2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelakeEL8-haswellEL8-icelakeUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the foss website.

Dependencies

This version of foss has a direct dependency on: FFTW/3.3.10-gompi-2021b FlexiBLAS/3.0.4-GCC-11.2.0 GCC/11.2.0 OpenMPI/4.1.1-GCC-11.2.0 ScaLAPACK/2.1.0-gompi-2021b-fb

Required By

This version of foss is a direct dependent of: adjustText/0.7.3-foss-2021b Arrow/6.0.0-foss-2021b arrow-R/6.0.0.2-foss-2021b-R-4.2.0 arrow-R/6.0.0.2-foss-2021b-R-4.1.2 ArviZ/0.11.4-foss-2021b bcbio-gff/0.6.9-foss-2021b BEAR-Python-MSc-Bioinformatics/2021b-foss-2021b BEAR-R-bio/2021b-foss-2021b-R-4.2.0 betapart/1.5.6-foss-2021b-R-4.2.0 biom-format/2.1.12-foss-2021b Biopython/1.79-foss-2021b BioServices/1.10.1-foss-2021b CIRI-long/1.1.0-foss-2021b cma/3.2.2-foss-2021b CMSeq/1.0.4-foss-2021b corner/2.2.1-foss-2021b DCC/0.5.0-foss-2021b DRAM/1.3.6-foss-2021b ELPA/2021.05.001-foss-2021b GDAL/3.3.2-foss-2021b gdm/1.5.0-3-foss-2021b-R-4.2.0 gprofiler-official/1.0.0-foss-2021b graphviz/0.20.1-foss-2021b h5py/3.6.0-foss-2021b HPL/2.3-foss-2021b HTSeq/0.11.3-foss-2021b inferCNV/1.12.0-foss-2021b-R-4.2.0 ioh/0.3.2.8.3-foss-2021b IRkernel/1.3-foss-2021b-R-4.2.0 JAGS/4.3.0-foss-2021b jax/0.3.13-foss-2021b-CUDA-11.4.1 jax/0.3.13-foss-2021b matplotlib/3.4.3-foss-2021b MetaPhlAn/3.0.14-foss-2021b mlxtend/0.19.0-foss-2021b monocle/2.24.1-foss-2021b-R-4.2.0 netcdf4-python/1.5.7-foss-2021b networkx/2.6.3-foss-2021b NLTK/3.7-foss-2021b numpyro/0.9.2-foss-2021b-CUDA-11.4.1 numpyro/0.9.2-foss-2021b OpenCV/4.5.5-foss-2021b-contrib Optuna/2.10.0-foss-2021b ottr/1.2.0-foss-2021b-R-4.2.0 PhitestR/0.2.0-foss-2021b-R-4.2.0 PhyloPhlAn/3.0.2-foss-2021b pyBigWig/0.3.18-foss-2021b pyhpo/3.1.2-foss-2021b pymoo/0.6.0-foss-2021b python-Levenshtein/0.12.2-foss-2021b QuantumESPRESSO/7.0-foss-2021b R/4.1.2-foss-2021b R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0 R-bundle-Bioconductor/3.14-foss-2021b-R-4.1.2 rjags/4-13-foss-2021b-R-4.2.0 RStudio-Server/1.4.1717-foss-2021b-Java-11-R-4.2.0 scikit-bio/0.5.7-foss-2021b scikit-learn/1.0.1-foss-2021b scikit-plot/0.3.7-foss-2021b SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b SEPP/4.5.1-foss-2021b sequenza/3.0.0-foss-2021b sequenza-utils/3.0.0-foss-2021b SpaTalk/1.0-foss-2021b-R-4.2.0 statsmodels/0.13.1-foss-2021b TensorFlow/2.7.1-foss-2021b TOBIAS/0.13.3-foss-2021b wittgenstein/0.3.2-foss-2021b xarray/0.20.1-foss-2021b

Other Versions

These versions of foss are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 25th May 2022