TALON 20230209-foss-2021b

TALON is a Python package for identifying and quantifying known and novel genes/isoforms in long-read transcriptome data sets. TALON is technology-agnostic in that it works from mapped SAM files, allowing data from different sequencing platforms (i.e. PacBio and Oxford Nanopore) to be analyzed side by side.

Accessing TALON 20230209-foss-2021b

To load the module for TALON 20230209-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load TALON/20230209-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • bamread 0.0.11
  • ncls 0.0.66
  • pyranges 0.0.120
  • pyrle 0.0.35
  • sorted_nearest 0.0.38
  • TALON 20230209

More Information

For more information visit the TALON website.

Dependencies

This version of TALON has a direct dependency on: BEDTools/2.30.0-GCC-11.2.0 foss/2021b pybedtools/0.8.2-GCC-11.2.0 pyfaidx/0.7.0-GCCcore-11.2.0 Pysam/0.17.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 scanpy/1.9.1-foss-2021b SciPy-bundle/2021.10-foss-2021b

Last modified on 10th February 2023