SciPy-bundle 2021.10-foss-2021b

Bundle of Python packages for scientific software

Accessing SciPy-bundle 2021.10-foss-2021b

To load the module for SciPy-bundle 2021.10-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load SciPy-bundle/2021.10-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelakeEL8-haswellEL8-icelakeUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • beniget 0.4.1
  • Bottleneck 1.3.2
  • deap 1.3.1
  • gast 0.5.2
  • mpi4py 3.1.1
  • mpmath 1.2.1
  • numexpr 2.7.3
  • numpy 1.21.3
  • pandas 1.3.4
  • ply 3.11
  • pythran 0.10.0
  • scipy 1.7.1

More Information

For more information visit the SciPy-bundle website.

Dependencies

This version of SciPy-bundle has a direct dependency on: foss/2021b pybind11/2.7.1-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0

Required By

This version of SciPy-bundle is a direct dependent of: adjustText/0.7.3-foss-2021b Arrow/6.0.0-foss-2021b ArviZ/0.11.4-foss-2021b autograd/1.5-foss-2021b bcbio-gff/0.6.9-foss-2021b BEAR-Python-MSc-Bioinformatics/2021b-foss-2021b biom-format/2.1.12-foss-2021b Biopython/1.79-foss-2021b BioServices/1.10.1-foss-2021b Bisbee/20210108-foss-2021b-R-4.2.0 canopus_treemap/0.0.1-foss-2021b CIRI-long/1.1.0-foss-2021b cma/3.2.2-foss-2021b CMSeq/1.0.4-foss-2021b corner/2.2.1-foss-2021b DCC/0.5.0-foss-2021b DRAM/1.3.6-foss-2021b ecc_finder/1.0.0_20221007_67d06f3-foss-2021b GDAL/3.3.2-foss-2021b Gdspy/1.6.12-foss-2021b gprofiler-official/1.0.0-foss-2021b h5py/3.6.0-foss-2021b HTSeq/0.11.3-foss-2021b imageio/2.13.5-foss-2021b ioh/0.3.2.8.3-foss-2021b jax/0.3.13-foss-2021b-CUDA-11.4.1 jax/0.3.13-foss-2021b LAMMPS/23Jun2022-foss-2021b-kokkos LAMMPS/23Jun2022-foss-2021b-kokkos-CUDA-11.4.1 matplotlib/3.4.3-foss-2021b Meep/1.25.0-foss-2021b MetaPhlAn/3.0.14-foss-2021b mlxtend/0.19.0-foss-2021b MNE-Python/1.1.1-foss-2021b netcdf4-python/1.5.7-foss-2021b networkx/2.6.3-foss-2021b NiBabel/3.2.2-foss-2021b NLTK/3.7-foss-2021b numba/0.54.1-foss-2021b numpyro/0.9.2-foss-2021b-CUDA-11.4.1 numpyro/0.9.2-foss-2021b OpenCV/4.5.5-foss-2021b-contrib Optuna/2.10.0-foss-2021b ParaView/5.9.1-foss-2021b-mpi PhyloPhlAn/3.0.2-foss-2021b PLUMED/2.7.3-foss-2021b pyBigWig/0.3.18-foss-2021b PyEnsembl/2.0.1-foss-2021b pyhpo/3.1.2-foss-2021b pymoo/0.6.0-foss-2021b PyTables/3.6.1-foss-2021b scanpy/1.8.2-foss-2021b scikit-bio/0.5.7-foss-2021b scikit-learn/1.0.1-foss-2021b SplAdder/3.0.3-foss-2021b statsmodels/0.13.1-foss-2021b TOBIAS/0.13.3-foss-2021b VTK/9.1.0-foss-2021b wittgenstein/0.3.2-foss-2021b xarray/0.20.1-foss-2021b

Other Versions

These versions of SciPy-bundle are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 26th May 2022