panaroo 1.3.2-foss-2021b

A pangenome analysis pipeline.

Accessing panaroo 1.3.2-foss-2021b

To load the module for panaroo 1.3.2-foss-2021b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2021b
module load panaroo/1.3.2-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• argcomplete 2.0.0
• argh 0.27.2
• biocode 0.10.0
• gffutils 0.11.1
• intbitset 3.0.2
• panaroo 1.3.2
• peewee 3.15.4
• taxadb 0.12.1

More Information

For more information visit the panaroo website.

Dependencies

This version of panaroo has a direct dependency on: Biopython/1.79-foss-2021b CD-HIT/4.8.1-GCC-11.2.0 DendroPy/4.5.2-GCCcore-11.2.0 edlib/1.3.9-GCC-11.2.0 foss/2021b matplotlib/3.4.3-foss-2021b networkx/2.6.3-foss-2021b plotly.py/5.4.0-GCCcore-11.2.0 PRANK/170427-GCC-11.2.0 prokka/1.14.5-gompi-2021b pyfaidx/0.7.0-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 python-igraph/0.9.8-foss-2021b scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b tqdm/4.62.3-GCCcore-11.2.0

Last modified on 10th February 2023