panaroo 1.3.2-foss-2021b

A pangenome analysis pipeline.

Accessing panaroo 1.3.2-foss-2021b

To load the module for panaroo 1.3.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load panaroo/1.3.2-foss-2021b

BEAR Apps Version




The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.


  • argcomplete 2.0.0
  • argh 0.27.2
  • biocode 0.10.0
  • gffutils 0.11.1
  • intbitset 3.0.2
  • panaroo 1.3.2
  • peewee 3.15.4
  • taxadb 0.12.1

More Information

For more information visit the panaroo website.


This version of panaroo has a direct dependency on: Biopython/1.79-foss-2021b CD-HIT/4.8.1-GCC-11.2.0 DendroPy/4.5.2-GCCcore-11.2.0 edlib/1.3.9-GCC-11.2.0 foss/2021b matplotlib/3.4.3-foss-2021b networkx/2.6.3-foss-2021b PRANK/170427-GCC-11.2.0 prokka/1.14.5-gompi-2021b pyfaidx/0.7.0-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 python-igraph/0.9.8-foss-2021b scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b tqdm/4.62.3-GCCcore-11.2.0

Last modified on 10th February 2023