Biopython 1.79-foss-2021b

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.

Accessing Biopython 1.79-foss-2021b

To load the module for Biopython 1.79-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load Biopython/1.79-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelakeEL8-haswellEL8-icelakeUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Biopython website.

Dependencies

This version of Biopython has a direct dependency on: foss/2021b Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Required By

This version of Biopython is a direct dependent of: bcbio-gff/0.6.9-foss-2021b Bisbee/20210108-foss-2021b-R-4.2.0 CIRI-long/1.1.0-foss-2021b CMSeq/1.0.4-foss-2021b ecc_finder/1.0.0_20221007_67d06f3-foss-2021b MetaPhlAn/3.0.14-foss-2021b PhyloPhlAn/3.0.2-foss-2021b TOBIAS/0.13.3-foss-2021b

Other Versions

These versions of Biopython are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th July 2022