CIRI-long 1.1.0-foss-2021bCircular RNA Identification for Long-Reads Nanopore Sequencing Data
Accessing CIRI-long 1.1.0-foss-2021b
To load the module for CIRI-long 1.1.0-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps/2021b
module load CIRI-long/1.1.0-foss-2021b
BEAR Apps Version
EL8-cascadelake — EL8-haswell — EL8-icelake
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- bwapy 0.1.4
- CIRI_long 1.1.0
- mappy 2.24
- pyccs 1.1.0
For more information visit the CIRI-long website.
This version of CIRI-long has a direct dependency on: Biopython/1.79-foss-2021b edlib/1.3.9-GCC-11.2.0 foss/2021b minimap2/2.24-GCCcore-11.2.0 Pysam/0.18.0-GCC-11.2.0 pyspoa/0.0.8-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 python-Levenshtein/0.12.2-foss-2021b SAMtools/1.15.1-GCC-11.2.0 scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b
Last modified on 26th July 2022