nanopolish 0.14.0-foss-2021bSignal-level algorithms for MinION data
Accessing nanopolish 0.14.0-foss-2021b
To load the module for nanopolish 0.14.0-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps/2021b
module load nanopolish/0.14.0-foss-2021b
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the nanopolish website.
This version of nanopolish has a direct dependency on: Biopython/1.79-foss-2021b foss/2021b HDF5/1.12.1-gompi-2021b HTSlib/1.14-GCC-11.2.0 minimap2/2.24-GCCcore-11.2.0 OrthoFinder/2.5.4-foss-2021b Pysam/0.18.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b VBZ-Compression/1.0.2-gompi-2021b zlib/1.2.11-GCCcore-11.2.0
Last modified on 4th April 2023