OrthoFinder 2.5.4-foss-2021b

Phylogenetic orthology inference for comparative genomics

Accessing OrthoFinder 2.5.4-foss-2021b

To load the module for OrthoFinder 2.5.4-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load OrthoFinder/2.5.4-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the OrthoFinder website.

Dependencies

This version of OrthoFinder has a direct dependency on: BLAST+/2.12.0-gompi-2021b DIAMOND/2.0.13-GCC-11.2.0 FastME/2.1.6.4-GCC-11.2.0 foss/2021b MCL/14.137-GCCcore-11.2.0 MMseqs2/13-45111-gompi-2021b Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Required By

This version of OrthoFinder is a direct dependent of: nanopolish/0.14.0-foss-2021b

Last modified on 9th February 2023