nanopolish 0.11.2-foss-2019a

Signal-level algorithms for MinION data

Accessing nanopolish 0.11.2-foss-2019a

To load the module for nanopolish 0.11.2-foss-2019a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load nanopolish/0.11.2-foss-2019a

BEAR Apps Version

2019a

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the nanopolish website.

Dependencies

This version of nanopolish has a direct dependency on: bzip2/1.0.6-GCCcore-8.2.0 Eigen/3.3.4-foss-2019a foss/2019a HDF5/1.10.5-gompi-2019a HTSlib/1.9-foss-2019a

Last modified on 11th December 2019