There is a newer version of HDF5HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.
Accessing HDF5 1.10.5-gompi-2019a
To load the module for HDF5 1.10.5-gompi-2019a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load HDF5/1.10.5-gompi-2019a
There is a GPU enabled version of this module: HDF5 1.10.5-gompic-2019a
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the HDF5 website.
This version of HDF5 has a direct dependency on: gompi/2019a Szip/2.1.1-GCCcore-8.2.0 zlib/1.2.11-GCCcore-8.2.0
This version of HDF5 is a direct dependent of: CDO/1.9.8-foss-2019a flappie/2.0.0-foss-2019a-Python-3.7.2 h5py/2.9.0-foss-2019a h5py/2.10.0-foss-2019a LAMMPS/stable_7Aug2019-foss-2019a-Python-3.7.2 lobSTR/4.0.6-foss-2019a nanopolish/0.11.2-foss-2019a ncbi-vdb/2.9.6-foss-2019a netCDF/4.6.2-gompi-2019a ParaView/5.4.1-foss-2019a-mpi R/3.6.0-foss-2019a R-bundle-Bioconductor/3.9-foss-2019a-R-3.6.0 VTK/8.2.0-foss-2019a-Python-3.7.2
These versions of HDF5 are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 5th July 2019