Deprecated: Use of this version of HDF5 is deprecated. More information on our Applications Support and Retention Policy.
There is a newer version of HDF5HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.
Accessing HDF5 1.10.2-foss-2018b
To load the module for HDF5 1.10.2-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load HDF5/1.10.2-foss-2018b
There is a GPU enabled version of this module: HDF5 1.10.2-fosscuda-2018b
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the HDF5 website.
This version of HDF5 has a direct dependency on: foss/2018b Szip/2.1.1-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0
This version of HDF5 is a direct dependent of: Deepbinner/0.2.0-foss-2018b-Python-3.6.6 flappie/1.1.0-foss-2018b h5py/2.8.0-foss-2018b-Python-2.7.15 h5py/2.8.0-foss-2018b-Python-3.6.6 kallisto/0.45.0-foss-2018b NCL/6.6.2-foss-2018b netCDF/4.6.1-foss-2018b OptiType/1.3.2-foss-2018b-Python-3.6.6 OptiType/1.3.2-foss-2018b-Python-2.7.15 ParaView/5.4.1-foss-2018b-mpi picopore/1.2.0-foss-2018b-Python-3.6.6 PyNIO/1.5.5-foss-2018b-Python-3.6.6 PyTables/3.4.4-foss-2018b-Python-2.7.15 PyTables/3.4.4-foss-2018b-Python-3.6.6 R/3.5.1-foss-2018b R/3.5.1-foss-2018b-Python-2.7.15 R-bundle-Bioconductor/3.7-foss-2018b-R-3.5.1 Scrappie/1.4.2-foss-2018b VTK/8.1.1-foss-2018b-Python-2.7.15 VTK/8.1.1-foss-2018b-Python-3.6.6
These versions of HDF5 are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 3rd June 2019