picopore 1.2.0-foss-2018b-Python-3.6.6

Deprecated: Use of this version of picopore is deprecated. More information on our Applications Support and Retention Policy.

A tool for reducing the size of Oxford Nanopore Technologies' datasets without losing information.

Accessing picopore 1.2.0-foss-2018b-Python-3.6.6

To load the module for picopore 1.2.0-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load picopore/1.2.0-foss-2018b-Python-3.6.6

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • argh 0.26.2
  • pathtools 0.1.2
  • picopore 1.2.0
  • watchdog 0.8.3

More Information

For more information visit the picopore website.

Dependencies

This version of picopore has a direct dependency on: foss/2018b future/0.16.0-foss-2018b-Python-3.6.6 h5py/2.8.0-foss-2018b-Python-3.6.6 HDF5/1.10.2-foss-2018b pkgconfig/1.3.1-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b PyYAML/3.13-foss-2018b-Python-3.6.6 zlib/1.2.11-GCCcore-7.3.0

Last modified on 5th June 2019