R 3.5.1-foss-2018b-Python-2.7.15

Deprecated: Use of this version of R is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of R

R is a free software environment for statistical computing and graphics.

Accessing R 3.5.1-foss-2018b-Python-2.7.15

To load the module for R 3.5.1-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load R/3.5.1-foss-2018b-Python-2.7.15

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Plotting in R and X11 Errors

If you receive an error message unable to open connection to X11 display when generating plots then you should either:

  • add options(bitmapType='cairo') before plotting
  • or change the plot command to include type="cairo"

Extensions

  • abc 2.1
  • abc.data 1.0
  • abind-1.4-5
  • acepack 1.4.1
  • adabag 4.2
  • ade4-1.7-11
  • adegenet 2.1.1
  • adephylo-1.1-11
  • ADGofTest 0.3
  • aggregation 1.0.1
  • akima-0.6-2
  • AlgDesign-1.1-7.3
  • animation 2.5
  • aod 1.3
  • ape 5.1
  • arm-1.10-1
  • assertthat 0.2.0
  • AUC 0.3.0
  • audio-0.1-5.1
  • b a
  • backports 1.1.2
  • base64 2.0
  • base64enc-0.1-3
  • BatchJobs 1.7
  • BayesianTools 0.1.5
  • bayesm-3.1-0.1
  • BB-2014.10-1
  • BBmisc 1.11
  • BDgraph 2.51
  • beanplot 1.2
  • beeswarm 0.2.3
  • BH-1.66.0-1
  • BiasedUrn 1.07
  • bibtex 0.4.2
  • bibtex 0.4.2
  • bigmemory 4.5.33
  • bigmemory.sri 0.1.3
  • bindr 0.1.1
  • bindrcpp 0.2.2
  • bio3d-2.3-4
  • biom 0.3.12
  • bit-1.1-14
  • bit64-0.9-7
  • bitops-1.0-6
  • blob 1.1.1
  • bmp 0.3
  • bnlearn 4.3
  • bold 0.5.0
  • boot-1.3-20
  • bootstrap 2017.2
  • brew-1.0-6
  • brglm 0.6.1
  • bridgedist 0.1.0
  • bridgesampling-0.4-0
  • Brobdingnag-1.2-6
  • broom 0.5.0
  • bst-0.3-15
  • Cairo-1.5-9
  • calibrate 1.7.2
  • callr 2.0.4
  • car-3.0-0
  • carData-3.0-1
  • caret-6.0-80
  • caTools 1.17.1.1
  • cellranger 1.1.0
  • cgdsr 1.2.10
  • cghFLasso-0.2-1
  • checkmate 1.8.5
  • chemometrics 1.4.2
  • chron-2.3-52
  • circlize 0.4.4
  • class-7.3-14
  • classInt-0.2-3
  • cli 1.0.0
  • clipr 0.4.1
  • cluster-2.0.7-1
  • clusterGeneration 1.3.4
  • clusterRepro-0.5-1.1
  • clustree 0.2.2
  • clValid-0.6-6
  • coda-0.19-1
  • codetools-0.2-15
  • coin-1.2-2
  • colorspace-1.3-2
  • combinat-0.0-8
  • ComICS 1.0.4
  • commonmark 1.5
  • compositions-1.40-2
  • corpcor 1.6.9
  • cowplot 0.9.3
  • crayon 1.3.4
  • crosstalk 1.0.0
  • crul 0.6.0
  • csSAM 1.2.4
  • cubature 1.4
  • curl 3.2
  • cvAUC 1.1.0
  • CVST-0.2-2
  • d a
  • d3Network 0.5.2.1
  • data.table 1.11.4
  • DBI 1.0.0
  • dbplyr 1.2.2
  • ddalpha 1.3.4
  • deal-1.2-37
  • debugme 1.1.0
  • deldir-0.1-15
  • dendextend 1.8.0
  • DEoptimR-1.0-8
  • Deriv 3.8.5
  • desc 1.2.0
  • deSolve 1.21
  • devtools 1.13.6
  • DHARMa 0.2.0
  • diagram 1.6.4
  • DiagrammeR 1.0.0
  • dichromat-2.0-0
  • digest 0.6.15
  • dimRed 0.1.0
  • diptest-0.75-7
  • DiscriMiner-0.1-29
  • dismo-1.1-4
  • distillery-1.0-4
  • distr 2.7.0
  • distrEx 2.7.0
  • DistributionUtils-0.5-1
  • diveRsity 1.9.90
  • doMC 1.3.5
  • doParallel 1.0.11
  • doRNG 1.7.1
  • doSNOW 1.0.16
  • dotCall64-1.0-0
  • downloader 0.4
  • dplyr 0.7.6
  • DRR 0.0.3
  • DT 0.4
  • dtangle 0.3.1
  • DTRreg 1.3
  • dtw-1.20-1
  • dummies 1.5.6
  • dynamicTreeCut-1.63-1
  • e1071-1.7-0
  • EasyABC 1.5
  • ellipse 0.4.1
  • emulator-1.2-17
  • energy-1.7-5
  • ergm 3.9.4
  • ergm.count 3.3.0
  • evaluate 0.11
  • expm-0.999-2
  • expsmooth 2.3
  • extrafont 0.17
  • extrafontdb 1.0
  • extRemes-2.0-9
  • FactoMineR 1.41
  • fail 1.3
  • fansi 0.3.0
  • fastcluster 1.1.25
  • fastICA-1.2-1
  • fastmatch-1.1-0
  • fdrtool 1.2.15
  • feather 0.3.1
  • ff-2.2-14
  • ffbase 0.12.3
  • fftw-1.0-4
  • fields 9.6
  • filehash-2.4-1
  • fishMod 0.29
  • fitdistrplus-1.0-11
  • flashClust-1.01-2
  • flexclust-1.3-5
  • flexmix-2.3-14
  • fma 2.3
  • FME 1.3.5
  • FNN 1.1.2.1
  • forcats 0.3.0
  • foreach 1.4.4
  • forecast 8.4
  • foreign-0.8-71
  • formatR 1.5
  • Formula-1.2-3
  • fossil 0.3.7
  • fpc-2.1-11.1
  • fpp 0.5
  • fracdiff-1.4-2
  • futile.logger 1.4.3
  • futile.options 1.0.1
  • future 1.9.0
  • g r
  • g r
  • g r
  • gam 1.16
  • gamlss-5.1-2
  • gamlss.data-5.0-1
  • gamlss.dist-5.0-6
  • gamlss.tr-5.1-0
  • gap-1.1-22
  • gapfill 0.9.6
  • gbm 2.1.3
  • gbRd-0.4-11
  • gclus 1.3.1
  • gdalUtils 2.0.1.14
  • gdata 2.18.0
  • gdistance-1.2-2
  • gee-4.13-19
  • geepack-1.2-1
  • geiger 2.0.6
  • GeneNet 1.2.13
  • geometry-0.3-6
  • getopt 1.20.2
  • GetoptLong 0.1.7
  • GGally 1.4.0
  • ggbeeswarm 0.6.0
  • ggforce 0.1.3
  • ggm 2.3
  • ggplot2 3.0.0
  • ggraph 1.0.2
  • ggrepel 0.8.0
  • ggridges 0.5.0
  • ggvis 0.4.3
  • GillespieSSA-0.5-4
  • git2r 0.23.0
  • glasso 1.10
  • gllvm 1.0
  • glmmML 1.0.3
  • glmmTMB 0.2.2.0
  • glmnet-2.0-16
  • GlobalOptions 0.1.0
  • globals 0.12.1
  • glue 1.3.0
  • gmm-1.6-2
  • gmodels 2.18.1
  • goftest-1.1-1
  • gomms 1.0
  • gower 0.1.2
  • gplots 3.0.1
  • gridBase-0.4-7
  • gridExtra 2.3
  • grpreg-3.2-0
  • GSA 1.03
  • gsalib 2.1
  • gsw-1.0-5
  • gtable 0.2.0
  • gtools 3.8.1
  • haven 1.1.2
  • hdf5r 1.0.0
  • heatmap3 1.1.1
  • hexbin 1.27.2
  • highr 0.7
  • Hmisc-4.1-1
  • hms 0.4.2
  • htmlTable 1.12
  • htmltools 0.3.6
  • htmlwidgets 1.2
  • httpcode 0.2.0
  • httpuv 1.4.5
  • httr 1.3.1
  • huge 1.2.7
  • hwriter 1.3.2
  • HWxtest 1.1.7
  • ica-1.0-2
  • IDPmisc 1.1.17
  • igraph 1.2.2
  • imager 0.41.1
  • ineq-0.2-13
  • influenceR 0.1.0
  • infotheo 1.2.0
  • interpretR 0.2.4
  • inum-1.0-0
  • ipred-0.9-7
  • irace 3.1
  • irlba 2.3.2
  • Iso-0.0-17
  • iterators 1.0.10
  • JBTools 0.7.2.9
  • jomo-2.6-3
  • jpeg-0.1-8
  • jsonlite 1.5
  • kernlab-0.9-27
  • KernSmooth-2.23-15
  • klaR-0.6-14
  • knitr 1.20
  • KODAMA 1.4
  • kohonen 3.0.6
  • ks 1.11.3
  • labdsv-1.8-0
  • labeling 0.3
  • labelled 1.1.0
  • laeken 0.4.6
  • lambda.r 1.2.3
  • lars 1.2
  • later 0.7.3
  • later 0.7.4
  • lattice-0.20-35
  • latticeExtra-0.6-28
  • lava 1.6.3
  • lavaan-0.6-2
  • lazy-1.2-16
  • lazyeval 0.2.1
  • leaps 3.0
  • LearnBayes 2.15.1
  • lhs 0.16
  • libcoin-1.0-1
  • limSolve 1.5.5.3
  • listenv 0.7.0
  • lme4-1.1-18-1
  • Lmoments-1.2-3
  • lmtest-0.9-36
  • locfdr-1.1-8
  • locfit-1.5-9.1
  • logcondens 2.1.5
  • logistf 1.23
  • logspline 2.1.11
  • longitudinal 1.1.12
  • longmemo-1.0-0
  • lpSolve 5.6.13
  • lsei-1.2-0
  • lubridate 1.7.4
  • m e
  • magic-1.5-8
  • magrittr 1.5
  • manipulateWidget 0.10.0
  • maps 3.3.0
  • maptools-0.9-3
  • markdown 0.8
  • MASS-7.3-50
  • Matching-4.9-3
  • MatchIt 3.0.2
  • Matrix-1.2-14
  • matrixcalc-1.0-3
  • MatrixModels-0.4-1
  • matrixStats 0.54.0
  • maxLik-1.3-4
  • mboost-2.9-0
  • mclust 5.4.1
  • mcmc-0.9-5
  • MCMCpack-1.4-4
  • mediation 4.4.6
  • memoise 1.1.0
  • memuse-4.0-0
  • metap 1.0
  • mgcv-1.8-24
  • mi 1.0
  • mice 3.3.0
  • mime 0.5
  • miniUI 0.1.1.1
  • minpack.lm-1.2-1
  • minqa 1.2.4
  • misc3d-0.8-4
  • miscTools-0.6-22
  • mitml-0.3-6
  • mixtools 1.1.0
  • mlbench-2.1-1
  • mlogit-0.3-0
  • mlr 2.12.1
  • mnormt-1.5-5
  • ModelMetrics 1.2.0
  • modelr 0.1.2
  • modeltools-0.2-22
  • moments 0.14
  • mpath-0.3-5
  • msm 1.6.6
  • multcomp-1.4-8
  • multicool-0.1-10
  • munsell 0.5.0
  • mvabund 3.13.1
  • mvtnorm-1.0-8
  • natserv 0.1.4
  • ncbit 2013.03.29
  • network 1.13.0.1
  • networkDynamic 0.9.0
  • neuRosim-0.2-12
  • nleqslv 3.3.2
  • nlme-3.1-137
  • nloptr 1.0.4
  • NLP-0.1-11
  • NMF 0.21.0
  • NMF 0.21.0
  • nnet-7.3-12
  • nnls 1.4
  • nor1mix-1.2-3
  • np-0.60-8
  • npsurv-0.4-0
  • numDeriv-2016.8-1
  • oce-0.9-23
  • OceanView 1.0.4
  • openssl 1.0.2
  • openxlsx 4.1.0
  • optmatch-0.9-10
  • optparse 1.6.0
  • ordinal-2018.4-19
  • pan 1.6
  • parallelMap 1.3
  • ParamHelpers 1.11
  • party-1.3-1
  • partykit-1.2-2
  • pastecs 1.3.21
  • pbapply-1.3-4
  • pbivnorm 0.6.0
  • pbkrtest-0.4-7
  • pcaPP-1.9-73
  • penalized-0.9-51
  • peperr-1.1-7
  • permute-0.9-4
  • phangorn 2.4.0
  • pheatmap 1.0.10
  • phylobase 0.8.4
  • pillar 1.3.0
  • pim 2.0.1
  • pinfsc50 1.1.0
  • pixmap-0.4-11
  • pkgbuild 1.0.0
  • pkgconfig 2.0.2
  • pkgload 1.0.0
  • pkgmaker 0.27
  • plogr 0.2.0
  • plot3D 1.1.1
  • plot3Drgl 1.0.1
  • plotly 4.8.0
  • plotrix-3.7-2
  • pls-2.6-0
  • plyr 1.8.4
  • png-0.1-7
  • PoissonSeq 1.1.2
  • polspline 1.1.13
  • polyclip-1.9-1
  • polynom-1.3-9
  • prabclus-2.2-6
  • pracma 2.1.4
  • praise 1.0.0
  • prettyunits 1.0.2
  • pROC 1.12.1
  • processx 3.2.0
  • prodlim 2018.04.18
  • profileModel-0.5-9
  • progress 1.2.0
  • promises 1.0.1
  • promises 1.0.1
  • proto 1.0.0
  • proxy-0.4-22
  • pryr 0.1.4
  • ps 1.1.0
  • pscl 1.5.2
  • pspline-1.0-18
  • psych 1.8.4
  • pulsar 0.3.4
  • purrr 0.2.5
  • pvclust-2.0-0
  • qgraph 1.5
  • qrnn 2.0.3
  • quadprog-1.5-5
  • quantmod-0.4-13
  • quantreg 5.36
  • questionr 0.6.3
  • R.cache 0.13.0
  • R.matlab 3.6.1
  • R.methodsS3 1.7.1
  • R.oo 1.22.0
  • R.rsp 0.42.0
  • R.utils 2.6.0
  • R6 2.2.2
  • randomForest-4.6-14
  • randomForestSRC 2.7.0
  • ranger 0.10.1
  • RANN 2.6
  • raster-2.6-7
  • RCircos 1.2.0
  • RColorBrewer-1.1-2
  • Rcpp 0.12.18
  • RcppArmadillo 0.9.100.5.0
  • RcppEigen 0.3.3.4.0
  • RcppGSL 0.3.6
  • RcppProgress 0.4.1
  • RcppRoll 0.3.0
  • RCurl-1.95-4.11
  • Rdpack-0.9-0
  • readbitmap 0.1.5
  • readr 1.1.1
  • readxl 1.1.0
  • recipes 0.1.3
  • registry 0.5
  • rematch 1.0.1
  • rentrez 1.2.1
  • reprex 0.2.0
  • reshape 0.8.7
  • reshape2 1.4.3
  • reticulate 1.10
  • RGCCA 2.1.2
  • rgdal-1.3-4
  • rgexf 0.15.3
  • rgl 0.99.16
  • RInside 0.2.14
  • rio 0.5.10
  • ritis 0.7.2
  • RItools-0.1-16
  • rJava-0.9-10
  • rjson 0.2.20
  • RJSONIO-1.3-0
  • rlang 0.2.2
  • rlecuyer-0.3-4
  • rmarkdown 1.10
  • rmeta 3.0
  • Rmpi-0.6-7
  • rms-5.1-2
  • RMTstat 0.3
  • rncl 0.8.3
  • RNeXML 2.1.2
  • rngtools 1.3.1
  • robustbase-0.93-2
  • ROCR-1.0-7
  • Rook-1.1-1
  • rootSolve 1.7
  • rotl 3.0.4
  • roxygen2 6.1.0
  • rpart-4.1-13
  • rprojroot-1.3-2
  • rrcov-1.4-4
  • rredlist 0.5.0
  • RSNNS-0.4-11
  • RSQLite 2.1.1
  • Rssa 1.0
  • rstudioapi 0.7
  • Rtsne 0.13
  • Rttf2pt1 1.3.7
  • RUnit 0.4.32
  • rversions 1.0.3
  • rvest 0.3.2
  • RWeka-0.4-38
  • RWekajars-3.9.2-1
  • s p
  • s t
  • s t
  • sandwich-2.5-0
  • scales 1.0.0
  • scatterplot3d-0.3-41
  • SDMTools-1.1-221
  • seewave 2.1.0
  • segmented-0.5-3.0
  • selectr-0.4-1
  • sem-3.1-9
  • sendmailR-1.2-1
  • seqinr-3.4-5
  • sfsmisc-1.1-2
  • shape 1.4.4
  • shapefiles 0.7
  • shiny 1.1.0
  • shinydashboard 0.7.0
  • shinythemes 1.1.2
  • signal-0.7-6
  • SimSeq 1.4.0
  • SKAT 1.3.2.1
  • slam-0.1-43
  • sm-2.2-5.5
  • smoother 1.1
  • sn-1.5-2
  • sna 2.4
  • snow-0.4-2
  • snowfall-1.84-6.1
  • solrium 1.0.0
  • som-0.3-5.1
  • soundecology 1.3.3
  • sourcetools 0.1.7
  • sp-1.3-1
  • spam-2.2-0
  • SparseM 1.77
  • spatial-7.3-11
  • spatstat-1.56-1
  • spatstat.data-1.3-1
  • spatstat.utils-1.9-0
  • spData 0.2.9.3
  • spdep-0.7-8
  • SQUAREM-2017.10-1
  • stabledist-0.7-1
  • stabs-0.6-3
  • startupmsg 0.9.5
  • statmod 1.4.30
  • statnet 2018.10
  • statnet.common 4.1.4
  • stringi 1.2.4
  • stringr 1.3.1
  • strucchange-1.5-1
  • subplex-1.5-4
  • SuperLearner-2.0-24
  • SuppDists-1.1-9.4
  • survival-2.42-6
  • survivalROC 1.0.3
  • svd 0.4.1
  • t o
  • taxize 0.9.4
  • tclust-1.4-1
  • TeachingDemos 2.10
  • tensor 1.5
  • tensorA 0.36.1
  • tergm 3.5.2
  • testthat 2.0.0
  • TH.data-1.0-9
  • tibble 1.4.2
  • tidygraph 1.1.0
  • tidyr 0.8.1
  • tidyselect 0.2.4
  • tidyverse 1.2.1
  • tiff-0.1-5
  • timeDate 3043.102
  • timereg 1.9.2
  • tinytex 0.6
  • tkrplot-0.0-24
  • tm-0.7-5
  • TMB 1.7.14
  • tmvtnorm-1.4-10
  • TraMineR-2.0-8
  • tree-1.0-39
  • triebeard 0.3.0
  • trimcluster-0.1-2.1
  • tripack-1.3-8
  • trust-0.1-7
  • tseries-0.10-45
  • tseriesChaos-0.1-13
  • tsna 0.2.0
  • tsne-0.1-3
  • TTR-0.23-3
  • tuneR 1.3.3
  • tweedie 2.3.2
  • tweenr 0.1.5
  • u t
  • ucminf-1.1-4
  • unbalanced 2.0
  • uniqueAtomMat-0.1-3-2
  • units-0.6-1
  • urca-1.3-0
  • urltools 1.7.1
  • uroot-2.0-9
  • utf8 1.1.4
  • uuid-0.1-2
  • vcd-1.4-4
  • vcfR 1.8.0
  • vegan-2.5-2
  • VennDiagram 1.6.20
  • VGAM-1.0-5
  • VIM 4.7.0
  • vioplot 0.2
  • vipor 0.4.5
  • viridis 0.5.1
  • viridisLite 0.3.0
  • visNetwork 2.0.4
  • waveslim 1.7.5
  • webshot 0.5.0
  • whisker-0.3-2
  • WikidataR 1.4.0
  • WikipediR 1.5.0
  • wikitaxa 0.2.0
  • withr 2.1.2
  • worrms 0.2.8
  • WriteXLS 4.0.0
  • xfun 0.3
  • xlsx 0.6.1
  • xlsxjars 0.6.1
  • XML-3.98-1.15
  • xml2 1.2.0
  • xtable-1.8-2
  • xts-0.11-0
  • yaml 2.2.0
  • zip 1.0.0
  • zoo-1.8-3

More Information

For more information visit the R website.

Dependencies

This version of R has a direct dependency on: bzip2/1.0.6-GCCcore-7.3.0 cairo/1.14.12-GCCcore-7.3.0 cURL/7.60.0-GCCcore-7.3.0 FFTW/3.3.8-gompi-2018b foss/2018b GDAL/2.2.3-foss-2018b-Python-2.7.15 GMP/6.1.2-GCCcore-7.3.0 GSL/2.5-GCC-7.3.0-2.30 HDF5/1.10.2-foss-2018b ICU/61.1-GCCcore-7.3.0 Java/1.8 libGLU/9.0.0-foss-2018b libjpeg-turbo/2.0.0-GCCcore-7.3.0 libpng/1.6.34-GCCcore-7.3.0 libreadline/7.0-GCCcore-7.3.0 libsndfile/1.0.28-GCCcore-7.3.0 LibTIFF/4.0.9-GCCcore-7.3.0 libxml2/2.9.8-GCCcore-7.3.0 Mesa/18.1.1-foss-2018b ncurses/6.1-GCCcore-7.3.0 NLopt/2.4.2-GCCcore-7.3.0 PCRE/8.41-GCCcore-7.3.0 PROJ/5.0.0-foss-2018b Python/2.7.15-foss-2018b SQLite/3.24.0-GCCcore-7.3.0 Tk/8.6.8-GCCcore-7.3.0 UDUNITS/2.2.26-foss-2018b X11/20180604-GCCcore-7.3.0 XZ/5.2.4-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0

Required By

This version of R is a direct dependent of: RSEM/1.3.1-foss-2018b

Other Versions

These versions of R are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th June 2019