R 4.4.1-gfbf-2023a

R is a free software environment for statistical computing and graphics.

Accessing R 4.4.1-gfbf-2023a

To load the module for R 4.4.1-gfbf-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load R/4.4.1-gfbf-2023a

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Plotting in R and X11 Errors

If you receive an error message unable to open connection to X11 display when generating plots then you should either:

  • add options(bitmapType='cairo') before plotting
  • or change the plot command to include type="cairo"

Extensions

  • askpass 1.2.0
  • base
  • base64enc-0.1-3
  • brew-1.0-10
  • brio 1.1.5
  • bslib 0.7.0
  • cachem 1.1.0
  • callr 3.7.6
  • cli 3.6.3
  • clipr 0.8.0
  • commonmark 1.9.1
  • compiler
  • cpp11 0.4.7
  • crayon 1.5.3
  • credentials 2.0.1
  • curl 5.2.1
  • datasets
  • desc 1.4.3
  • devtools 2.4.5
  • diffobj 0.3.5
  • digest 0.6.36
  • downlit 0.4.4
  • ellipsis 0.3.2
  • evaluate 0.24.0
  • fansi 1.0.6
  • fastmap 1.2.0
  • fontawesome 0.5.2
  • fs 1.6.4
  • gert 2.0.1
  • gh 1.4.1
  • gitcreds 0.1.2
  • glue 1.7.0
  • graphics
  • grDevices
  • grid
  • highr 0.11
  • htmltools 0.5.8.1
  • htmlwidgets 1.6.4
  • httpuv 1.6.15
  • httr 1.4.7
  • httr2 1.0.1
  • ini 0.3.1
  • jquerylib 0.1.4
  • jsonlite 1.8.8
  • knitr 1.47
  • later 1.3.2
  • lifecycle 1.0.4
  • magrittr 2.0.3
  • memoise 2.0.1
  • methods
  • mime 0.12
  • miniUI 0.1.1.1
  • openssl 2.2.0
  • parallel
  • pillar 1.9.0
  • pkgbuild 1.4.4
  • pkgconfig 2.0.3
  • pkgdown 2.0.9
  • pkgload 1.3.4
  • praise 1.0.0
  • prettyunits 1.2.0
  • processx 3.8.4
  • profvis 0.3.8
  • promises 1.3.0
  • ps 1.7.6
  • purrr 1.0.2
  • R6 2.5.1
  • ragg 1.3.2
  • rappdirs 0.3.3
  • rcmdcheck 1.4.0
  • Rcpp 1.0.12
  • rematch2 2.1.2
  • remotes 2.5.0
  • rlang 1.1.4
  • rmarkdown 2.27
  • roxygen2 7.3.1
  • rprojroot 2.0.4
  • rstudioapi 0.16.0
  • rversions 2.1.2
  • sass 0.4.9
  • sessioninfo 1.2.2
  • shiny 1.8.1.1
  • sourcetools-0.1.7-1
  • splines
  • stats
  • stats4
  • stringi 1.8.4
  • stringr 1.5.1
  • sys 3.4.2
  • systemfonts 1.1.0
  • tcltk
  • testthat 3.2.1.1
  • textshaping 0.4.0
  • tibble 3.2.1
  • tinytex 0.51
  • tools
  • urlchecker 1.0.1
  • usethis 2.2.3
  • utf8 1.2.4
  • utils
  • vctrs 0.6.5
  • waldo 0.5.2
  • whisker 0.4.1
  • withr 3.0.0
  • xfun 0.45
  • xml2 1.3.6
  • xopen 1.0.1
  • xtable-1.8-4
  • yaml 2.3.8
  • zip 2.3.1

More Information

For more information visit the R website.

Dependencies

This version of R has a direct dependency on: bzip2/1.0.8-GCCcore-12.3.0 cairo/1.17.8-GCCcore-12.3.0 cURL/8.0.1-GCCcore-12.3.0 FriBidi/1.0.12-GCCcore-12.3.0 gfbf/2023a HarfBuzz/5.3.1-GCCcore-12.3.0 Java/11 libgit2/1.7.1-GCCcore-12.3.0 libGLU/9.0.3-GCCcore-12.3.0 libjpeg-turbo/2.1.5.1-GCCcore-12.3.0 libpng/1.6.39-GCCcore-12.3.0 libreadline/8.2-GCCcore-12.3.0 LibTIFF/4.5.0-GCCcore-12.3.0 Mesa/23.1.4-GCCcore-12.3.0 ncurses/6.4-GCCcore-12.3.0 OpenSSL/1.1 PCRE2/10.42-GCCcore-12.3.0 SQLite/3.42.0-GCCcore-12.3.0 Tk/8.6.13-GCCcore-12.3.0 X11/20230603-GCCcore-12.3.0 XZ/5.4.2-GCCcore-12.3.0 zlib/1.2.13-GCCcore-12.3.0

Required By

This version of R is a direct dependent of: arrow-R/14.0.1-foss-2023a-R-4.4.1 BEAR-R-bio/2023a-foss-2023a-R-4.4.1 IRkernel/1.3.2-gfbf-2023a-R-4.4.1 R-bundle-Bioconductor/3.19-foss-2023a-R-4.4.1 R-bundle-CRAN/2024.06-foss-2023a

Other Versions

These versions of R are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 28th June 2024