There is a newer version of HTSlibA C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
Accessing HTSlib 1.9-foss-2019a
To load the module for HTSlib 1.9-foss-2019a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load HTSlib/1.9-foss-2019a
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the HTSlib website.
This version of HTSlib has a direct dependency on: bzip2/1.0.6-GCCcore-8.2.0 cURL/7.63.0-GCCcore-8.2.0 foss/2019a XZ/5.2.4-GCCcore-8.2.0 zlib/1.2.11-GCCcore-8.2.0
This version of HTSlib is a direct dependent of: BCFtools/1.9-foss-2019a nanopolish/0.11.2-foss-2019a
These versions of HTSlib are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 19th August 2019