There is a newer version of BCFtoolsSamtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
Accessing BCFtools 1.9-foss-2019a
To load the module for BCFtools 1.9-foss-2019a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load BCFtools/1.9-foss-2019a
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the BCFtools website.
This version of BCFtools has a direct dependency on: bzip2/1.0.6-GCCcore-8.2.0 foss/2019a GSL/2.5-GCC-8.2.0-2.31.1 HTSlib/1.9-foss-2019a XZ/5.2.4-GCCcore-8.2.0 zlib/1.2.11-GCCcore-8.2.0
These versions of BCFtools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 19th August 2019