NanoFilt 2.8.0-foss-2021b

Filtering and trimming of long read sequencing data.

Accessing NanoFilt 2.8.0-foss-2021b

To load the module for NanoFilt 2.8.0-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load NanoFilt/2.8.0-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the NanoFilt website.

Dependencies

This version of NanoFilt has a direct dependency on: Biopython/1.79-foss-2021b foss/2021b Python/3.9.6-GCCcore-11.2.0

Last modified on 4th January 2023