PhyloPhlAn 3.0.2-foss-2021b

PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use method for large-scale microbial genome characterization and phylogenetic analysis at multiple levels of resolution.

Accessing PhyloPhlAn 3.0.2-foss-2021b

To load the module for PhyloPhlAn 3.0.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load PhyloPhlAn/3.0.2-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the PhyloPhlAn website.

Dependencies

This version of PhyloPhlAn has a direct dependency on: Biopython/1.79-foss-2021b BLAST+/2.12.0-gompi-2021b DendroPy/4.5.2-GCCcore-11.2.0 DIAMOND/2.0.13-GCC-11.2.0 FastTree/2.1.11-GCCcore-11.2.0 foss/2021b IQ-TREE/2.2.1-gompi-2021b MAFFT/7.490-gompi-2021b-with-extensions matplotlib/3.4.3-foss-2021b MUSCLE/5.1-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b SEPP/4.5.1-foss-2021b trimAl/1.4.1-GCCcore-11.2.0 USEARCH/11.0.667-i86linux32

Required By

This version of PhyloPhlAn is a direct dependent of: MetaPhlAn/3.0.14-foss-2021b

Last modified on 14th July 2022