BEAR Applications

BioServices 1.10.1-foss-2021b

Bioservices is a Python package that provides access to many Bioinformatices Web Services (e.g., UniProt) and a framework to easily implement Web Services wrappers (based on WSDL/SOAP or REST protocols).

Accessing BioServices 1.10.1-foss-2021b

To load the module for BioServices 1.10.1-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load BioServices/1.10.1-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

• BioServices 1.10.1
• cattrs 22.1.0
• colorlog 6.6.0
• easydev 0.12.0
• exceptiongroup 1.0.0rc8
• flit 3.7.1
• flit_core 3.7.1
• flit_scm 1.6.2
• gevent 21.12.0
• greenlet 1.1.2
• grequests 0.6.0
• requests-cache-0.9.5
• setuptools_scm 6.4.2
• suds-community-1.1.2
• tomli 2.0.1
• tomli_w 1.0.0
• url-normalize-1.4.3
• wrapt 1.14.1
• xmltodict 0.13.0
• zope.event 4.5.0
• zope.interface 5.4.0

More Information

For more information visit the BioServices website.

Dependencies

This version of BioServices has a direct dependency on: BeautifulSoup/4.10.0-GCCcore-11.2.0 foss/2021b lxml/4.6.3-GCCcore-11.2.0 matplotlib/3.4.3-foss-2021b Python/3.9.6-GCCcore-11.2.0 scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b tqdm/4.62.3-GCCcore-11.2.0

Required By

This version of BioServices is a direct dependent of: BEAR-Python-MSc-Bioinformatics/2021b-foss-2021b

Other Versions

These versions of BioServices are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 10th August 2022