BEAR-Python-MSc-Bioinformatics 2021b-foss-2021b

This module provides access to several Python Data Science libraries.

Accessing BEAR-Python-MSc-Bioinformatics 2021b-foss-2021b

To load the module for BEAR-Python-MSc-Bioinformatics 2021b-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load BEAR-Python-MSc-Bioinformatics/2021b-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelakeEL8-haswellEL8-icelakeUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Dependencies

This version of BEAR-Python-MSc-Bioinformatics has a direct dependency on: BioServices/1.10.1-foss-2021b foss/2021b gprofiler-official/1.0.0-foss-2021b graphviz/0.20.1-foss-2021b intermine/1.13.0-GCCcore-11.2.0 matplotlib/3.4.3-foss-2021b mlxtend/0.19.0-foss-2021b networkx/2.6.3-foss-2021b NLTK/3.7-foss-2021b OpenCV/4.5.5-foss-2021b-contrib plotly.py/5.4.0-GCCcore-11.2.0 pyhpo/3.1.2-foss-2021b Python/3.9.6-GCCcore-11.2.0 scikit-learn/1.0.1-foss-2021b scikit-plot/0.3.7-foss-2021b SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b sequenza-utils/3.0.0-foss-2021b statsmodels/0.13.1-foss-2021b TensorFlow/2.7.1-foss-2021b wittgenstein/0.3.2-foss-2021b

Other Versions

These versions of BEAR-Python-MSc-Bioinformatics are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
2020a-foss-2020a-Python-3.8.2 2020a

Last modified on 10th August 2022