BEAR-Python-MSc-Bioinformatics 2022b-foss-2022b

This module provides access to several Python Data Science libraries.

Accessing BEAR-Python-MSc-Bioinformatics 2022b-foss-2022b

To load the module for BEAR-Python-MSc-Bioinformatics 2022b-foss-2022b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022b
module load BEAR-Python-MSc-Bioinformatics/2022b-foss-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Dependencies

This version of BEAR-Python-MSc-Bioinformatics has a direct dependency on: BioServices/1.11.2-foss-2022b foss/2022b gprofiler-official/1.0.0-foss-2022b graphviz/0.20.1-foss-2022b intermine/1.13.0-GCCcore-12.2.0 matplotlib/3.7.0-gfbf-2022b mlxtend/0.22.0-gfbf-2022b mvlearn/0.5.0-foss-2022b networkx/3.0-gfbf-2022b NLTK/3.8.1-foss-2022b OpenCV/4.8.0-foss-2022b-contrib plotly.py/5.13.1-GCCcore-12.2.0 pyhpo/3.2.2-gfbf-2022b Python/3.10.8-GCCcore-12.2.0 scikit-image/0.21.0-foss-2022b scikit-learn/1.2.1-gfbf-2022b scikit-plot/0.3.7-foss-2022b SciPy-bundle/2023.02-gfbf-2022b Seaborn/0.12.2-foss-2022b sequenza-utils/3.0.0-foss-2022b statsmodels/0.14.0-gfbf-2022b wittgenstein/0.3.4-foss-2022b

Other Versions

These versions of BEAR-Python-MSc-Bioinformatics are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 27th July 2023