PHATE 1.0.10-foss-2021bPHATE (Potential of Heat-diffusion for Affinity-based Trajectory Embedding) is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another.
Accessing PHATE 1.0.10-foss-2021b
To load the module for PHATE 1.0.10-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load bear-apps/2021b
module load PHATE/1.0.10-foss-2021b
BEAR Apps Version
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- Deprecated 1.2.14
- graphtools 1.5.3
- phate 1.0.10
- PyGSP 0.5.1
- s_gd2 1.8.1
- scprep 1.2.2
- tasklogger 1.2.0
- wrapt 1.15.0
For more information visit the PHATE website.
This version of PHATE is a direct dependent of: phateR/1.0.7-foss-2021b-R-4.2.0
Last modified on 5th June 2023