SSAM 1.0.2-foss-2021b

Spot-based Spatial cell-type Analysis by Multidimensional mRNA density estimation

Accessing SSAM 1.0.2-foss-2021b

To load the module for SSAM 1.0.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load SSAM/1.0.2-foss-2021b

BEAR Apps Version




The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.


  • pynndescent 0.5.8
  • python-louvain-0.16
  • sparse 0.14.0
  • SSAM 1.0.2
  • umap-learn-0.5.3

More Information

For more information visit the SSAM website.


This version of SSAM has a direct dependency on: Arrow/6.0.0-foss-2021b arrow-R/ foss/2021b IPython/7.26.0-GCCcore-11.2.0 numba/0.54.1-foss-2021b Python/3.9.6-GCCcore-11.2.0 R/4.2.0-foss-2021b scikit-image/0.19.1-foss-2021b scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b tqdm/4.62.3-GCCcore-11.2.0

Last modified on 28th March 2023