DRAM 1.3.6-foss-2021bDRAM (Distilled and Refined Annotation of Metabolism) is a tool for annotating metagenomic assembled genomes and VirSorter identified viral contigs. DRAM annotates MAGs and viral contigs using KEGG (if provided by the user), UniRef90, PFAM, dbCAN, RefSeq viral, VOGDB and the MEROPS peptidase database as well as custom user databases.
Accessing DRAM 1.3.6-foss-2021b
To load the module for DRAM 1.3.6-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps/2021b
module load DRAM/1.3.6-foss-2021b
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- altair 4.2.0
- greenlet 1.1.2
- openpyxl 3.0.9
- SQLAlchemy 1.4.40
- toolz 0.12.0
For more information visit the DRAM website.
This version of DRAM has a direct dependency on: barrnap/0.9-gompi-2021b foss/2021b HMMER/3.3.2-gompi-2021b MMseqs2/13-45111-gompi-2021b networkx/2.6.3-foss-2021b parallel/20210722-GCCcore-11.2.0 prodigal/2.6.3-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 Ruby/3.0.1-GCCcore-11.2.0 scikit-bio/0.5.7-foss-2021b SciPy-bundle/2021.10-foss-2021b tRNAscan-SE/2.0.9-GCCcore-11.2.0
Last modified on 25th August 2022