There is a newer version of h5pyHDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
Accessing h5py 3.6.0-foss-2021b
To load the module for h5py 3.6.0-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps/2021b
module load h5py/3.6.0-foss-2021b
BEAR Apps Version
EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the h5py website.
This version of h5py has a direct dependency on: foss/2021b HDF5/1.12.1-gompi-2021b Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b
This version of h5py is a direct dependent of: biom-format/2.1.12-foss-2021b Bisbee/20210108-foss-2021b-R-4.2.0 emcee/3.1.3-foss-2021b MetaPhlAn/3.0.14-foss-2021b MNE-Python/1.1.1-foss-2021b mofapy2/0.6.7-foss-2021b mofapy2/0.7.0-foss-2021b PyMC3/3.11.1-foss-2021b scanpy/1.9.1-foss-2021b scanpy/1.8.2-foss-2021b scikit-bio/0.5.7-foss-2021b SplAdder/3.0.3-foss-2021b TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1 TensorFlow/2.7.1-foss-2021b TensorFlow/2.8.4-foss-2021b
These versions of h5py are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 14th July 2022