SciPy-bundle 2021.05-foss-2021a

There is a newer version of SciPy-bundle

Bundle of Python packages for scientific software

Accessing SciPy-bundle 2021.05-foss-2021a

To load the module for SciPy-bundle 2021.05-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SciPy-bundle/2021.05-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelakeEL8-haswellEL8-icelakeUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • Bottleneck 1.3.2
  • deap 1.3.1
  • mpi4py 3.0.3
  • mpmath 1.2.1
  • numexpr 2.7.3
  • numpy 1.20.3
  • pandas 1.2.4
  • scipy 1.6.3

More Information

For more information visit the SciPy-bundle website.

Dependencies

This version of SciPy-bundle has a direct dependency on: foss/2021a pybind11/2.6.2-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0

Required By

This version of SciPy-bundle is a direct dependent of: AlphaFold/2.1.1-foss-2021a AlphaFold/2.1.1-foss-2021a-CUDA-11.3.1 ASE/3.22.0-foss-2021a astropy/5.0.4-foss-2021a autograd/1.4-foss-2021a Biopython/1.79-foss-2021a bokeh/2.4.1-foss-2021a Boost.Python/1.76.0-foss-2021a-numpy BRHCLUS/4.7.2-foss-2021a bx-python/0.8.11-foss-2021a cgat/0.6.5-foss-2021a CheckM/1.1.3-foss-2021a coexist/0.2.2-foss-2021a dask/2021.9.1-foss-2021a deepBlink/0.1.2-foss-2021a deepBlink/0.1.2-foss-2021a-CUDA-11.3.1 ETE/3.1.2-foss-2021a GDAL/3.3.0-foss-2021a Gdspy/1.6.12-foss-2021a GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2 GROMACS/2021.3-foss-2021a GROMACS/2021.3-foss-2021a-CUDA-11.3.1 h5py/3.2.1-foss-2021a jax/0.2.24-foss-2021a-CUDA-11.3.1 jax/0.2.24-foss-2021a loompy/3.0.7-foss-2021a MAGeCK/0.5.9.4-foss-2021a matplotlib/3.4.2-foss-2021a Meep/1.23.0-foss-2021a Megalodon/2.4.2-foss-2021a networkx/2.5.1-foss-2021a NiBabel/3.2.1-foss-2021a NLopt/2.7.0-foss-2021a-Python numba/0.53.1-foss-2021a Open3D/0.15.1-foss-2021a OpenCV/4.5.3-foss-2021a-contrib OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib pept/0.4.1-foss-2021a PETSc/3.15.1-foss-2021a petsc4py/3.15.0-foss-2021a PLUMED/2.7.2-foss-2021a pyBigWig/0.3.18-foss-2021a PyTables/3.6.1-foss-2021a PyTorch/1.9.1-foss-2021a-CUDA-11.3.1-imkl PyTorch/1.10.0-foss-2021a-CUDA-11.3.1 PyTorch/1.10.0-foss-2021a PyTorch/1.9.1-foss-2021a-imkl Remora/0.1.2-foss-2021a rmats2sashimiplot/2.0.4-foss-2021a RNA-SeQC/2.4.2-foss-2021a scanpy/1.8.1-foss-2021a scikit-learn/0.24.2-foss-2021a scVelo/0.2.4-foss-2021a spglib-python/1.16.1-foss-2021a statsmodels/0.12.2-foss-2021a Trilinos/13.2.0-foss-2021a velocyto/0.17.17-foss-2021a VTK/9.0.1-foss-2021a VTK/8.2.0-foss-2021a wxPython/4.1.1-foss-2021a

Other Versions

These versions of SciPy-bundle are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 10th September 2021