foss 2021a

There is a newer version of foss

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

Accessing foss 2021a

To load the module for foss 2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load foss/2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelakeEL8-haswellEL8-icelakeUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the foss website.

Dependencies

This version of foss has a direct dependency on: FFTW/3.3.9-gompi-2021a FlexiBLAS/3.0.4-GCC-10.3.0 GCC/10.3.0 OpenMPI/4.1.1-GCC-10.3.0 ScaLAPACK/2.1.0-gompi-2021a-fb

Required By

This version of foss is a direct dependent of: AlphaFold/2.1.1-foss-2021a-CUDA-11.3.1 AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1 AlphaFold/2.1.1-foss-2021a AlphaPulldown/0.21.6-foss-2021a-CUDA-11.3.1 apcluster/1.4.8-foss-2021a Armadillo/10.7.4-foss-2021a arpack-ng/3.8.0-foss-2021a ASE/3.22.0-foss-2021a astropy/5.0.4-foss-2021a autograd/1.4-foss-2021a BEAR-R-bio/2021a-foss-2021a-R-4.1.0 BEDOPS/2.4.40-foss-2021a Biopython/1.79-foss-2021a blockCV/2.1.4-foss-2021a-R-4.1.0 bokeh/2.4.1-foss-2021a Boost.Python/1.76.0-foss-2021a-numpy BRHCLUS/4.7.2-foss-2021a bx-python/0.8.11-foss-2021a CAGEr/1.34.0-foss-2021a-R-4.1.0 CellBender/0.2.0-foss-2021a CellBender/0.2.0-foss-2021a-CUDA-11.3.1 Cellpose/0.6.5-foss-2021a-CUDA-11.3.1 Cellpose/0.6.5-foss-2021a CellRank/1.5.1-foss-2021a CESM/2.1.3-foss-2021a cgat/0.6.5-foss-2021a CheckM/1.1.3-foss-2021a ChIPseeker/1.28.3-foss-2021a-R-4.1.0 CloudCompare/2.12.0-foss-2021a coexist/0.2.2-foss-2021a CP2K/9.1-foss-2021a ctffind/4.1.14-foss-2021a-CUDA-11.3.1 ctffind/4.1.14-foss-2021a dask/2021.9.1-foss-2021a DataCombine/0.2.21-foss-2021a-R-4.1.0 deal.II/9.3.1-foss-2021a deal.II/20220223-foss-2021a deal.II/9.4.0-foss-2021a deepBlink/0.1.2-foss-2021a deepBlink/0.1.2-foss-2021a-CUDA-11.3.1 demultiplex/1.2.2-foss-2021a docstring/1.0.0-foss-2021a DualSPHysics/5.0.175-foss-2021a DualSPHysics/5.0.175-foss-2021a-CUDA-11.3.1 EnhancedVolcano/20211028-foss-2021a-R-4.1.0 ESMF/8.1.1-foss-2021a ETE/3.1.2-foss-2021a FIX/1.06.15-foss-2021a FLANN/1.9.2-foss-2021a footBayes/20211103-foss-2021a-R-4.1.0 freesurfer/1.6.8-foss-2021a-R-4.1.0 FSL/6.0.5.1-foss-2021a FSL/6.0.5.1-foss-2021a-fslpython FSLeyes/1.3.3-foss-2021a fslr/2.24.1-foss-2021a-R-4.1.0 GDAL/3.3.0-foss-2021a gdalUtils/2.0.3.2-foss-2021a-R-4.1.0 Gdspy/1.6.12-foss-2021a GeomxTools/1.0.0-foss-2021a-R-4.1.0 gmsh/4.11.0-foss-2021a GROMACS/2021.3-foss-2021a GROMACS/2021.3-foss-2021a-CUDA-11.3.1 GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2 gsfisher/3ad1d79-foss-2021a-R-4.1.0 GTDB-Tk/2.0.0-foss-2021a h5py/3.2.1-foss-2021a Harminv/1.4.1-foss-2021a HiCUP/0.8.3-foss-2021a Horovod/0.23.0-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0 Horovod/0.23.0-foss-2021a-CUDA-11.3.1-TensorFlow-2.6.0 HPL/2.3-foss-2021a Hypre/2.21.0-foss-2021a iClusterPlus/1.28.0-foss-2021a igraph/0.9.4-foss-2021a IRkernel/1.2-foss-2021a-R-4.1.0 jax/0.2.24-foss-2021a-CUDA-11.3.1 jax/0.2.24-foss-2021a jax/0.3.9-foss-2021a-CUDA-11.3.1 Kornia/0.6.3-foss-2021a-CUDA-11.3.1 Kornia/0.6.3-foss-2021a LAMMPS/29Sep2021-foss-2021a-kokkos LAMMPS/29Sep2021-foss-2021a-CUDA-11.3.1-kokkos leidenalg/0.8.7-foss-2021a log4r/0.4.2-foss-2021a loompy/3.0.7-foss-2021a MAGeCK/0.5.9.4-foss-2021a magma/2.6.1-foss-2021a-CUDA-11.3.1 matplotlib/3.4.2-foss-2021a Meep/1.23.0-foss-2021a Megalodon/2.4.2-foss-2021a MESMER/6.1-foss-2021a Minimac4/1.0.2-foss-2021a MPB/1.11.1-foss-2021a MRtrix/3.0.3-foss-2021a mstate/0.3.2-foss-2021a-R-4.1.0 MUMPS/5.4.0-foss-2021a-metis ncdf4/1.17-foss-2021a-R-4.1.0 networkx/2.5.1-foss-2021a NiBabel/3.2.1-foss-2021a NLopt/2.7.0-foss-2021a-Python numba/0.53.1-foss-2021a occt/7.5.0p1-foss-2021a Open3D/0.15.1-foss-2021a OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib OpenCV/4.5.3-foss-2021a-contrib OpenLB/1.4-0-foss-2021a ORTHOLOGER/2.4.3-foss-2021a p4est/2.3.3-foss-2021a PCL/1.12.1-foss-2021a pept/0.4.1-foss-2021a PETSc/3.15.1-foss-2021a petsc4py/3.15.0-foss-2021a PharmacoGx/2.4.0-foss-2021a phenoptrReports/0.3.0-foss-2021a-R-4.1.0 PICI-LIGGGHTS/20220118-foss-2021a-VTK-8.2.0 PLUMED/2.7.2-foss-2021a pyBigWig/0.3.18-foss-2021a PyTables/3.6.1-foss-2021a python-igraph/0.9.6-foss-2021a PyTorch/1.9.1-foss-2021a-imkl PyTorch/1.10.0-foss-2021a PyTorch/1.10.0-foss-2021a-CUDA-11.3.1 PyTorch/1.9.1-foss-2021a-CUDA-11.3.1-imkl PyTorch-Geometric/2.0.4-foss-2021a-CUDA-11.3.1 pytorch-lightning/1.5.7-foss-2021a pytorch-lightning/1.5.7-foss-2021a-CUDA-11.3.1 QD/2.3.23-foss-2021a R/4.1.0-foss-2021a R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0 rcdk/3.6.0-foss-2021a RELION/4.0.0-foss-2021a-CUDA-11.3.1 RELION/3.1.3-foss-2021a RELION/4.0.0-foss-2021a RELION/3.1.3-foss-2021a-CUDA-11.3.1 Remora/0.1.2-foss-2021a rgdal/1.5-23-foss-2021a-R-4.1.0 rmats2sashimiplot/2.0.4-foss-2021a rmweather/0.1.51-foss-2021a-R-4.1.0 RNA-SeQC/2.4.2-foss-2021a RStudio-Server/1.3.1093-foss-2021a-Java-11-R-4.1.0 RStudio-Server/1.4.1717-foss-2021a-Java-11-R-4.1.0 ScaFaCoS/1.0.1-foss-2021a scanpy/1.8.1-foss-2021a scikit-image/0.18.3-foss-2021a scikit-learn/0.24.2-foss-2021a SciPy-bundle/2021.05-foss-2021a scVelo/0.2.4-foss-2021a Seaborn/0.11.2-foss-2021a shinycssloaders/1.0.0-foss-2021a SimPEG/0.18.1-foss-2021a SLEPc/3.15.1-foss-2021a slepc4py/3.15.1-foss-2021a SNFtool/2.3.1-foss-2021a spglib-python/1.16.1-foss-2021a splancs/2.01-42-foss-2021a statsmodels/0.12.2-foss-2021a SuiteSparse/5.10.1-foss-2021a-METIS-5.1.0 SUNDIALS/5.8.0-foss-2021a survcomp/1.42.0-foss-2021a TC-Python/2022a-foss-2021a TensorFlow/2.6.0-foss-2021a-CUDA-11.3.1 TensorFlow/2.6.0-foss-2021a Thermo-Calc/2022a-foss-2021a torchvision/0.11.1-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0 torchvision/0.11.1-foss-2021a-CUDA-11.3.1 torchvision/0.11.1-foss-2021a torchvision/0.11.1-foss-2021a-PyTorch-1.10.0 treeseg/0.2.2-foss-2021a Trilinos/13.2.0-foss-2021a velocyto/0.17.17-foss-2021a VTK/9.0.1-foss-2021a VTK/8.2.0-foss-2021a writexl/1.4.0-foss-2021a-R-4.1.0 wxPython/4.1.1-foss-2021a

Other Versions

These versions of foss are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 10th September 2021