CellBender 0.2.0-foss-2021aCellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
Accessing CellBender 0.2.0-foss-2021a
To load the module for CellBender 0.2.0-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load CellBender/0.2.0-foss-2021a
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- anndata 0.8.0
- CellBender 0.2.0
- natsort 8.1.0
- opt_einsum 3.3.0
- sphinx_autodoc_typehints 1.15.1
- sphinx_rtd_theme 1.0.0
For more information visit the CellBender website.
This version of CellBender has a direct dependency on: foss/2021a h5py/3.2.1-foss-2021a matplotlib/3.4.2-foss-2021a PyTables/3.6.1-foss-2021a Python/3.9.5-GCCcore-10.3.0 PyTorch/1.10.0-foss-2021a scikit-learn/0.24.2-foss-2021a tqdm/4.61.2-GCCcore-10.3.0
Last modified on 31st May 2022