Python 3.9.5-GCCcore-10.3.0

There is a newer version of Python

Python is a programming language that lets you work more quickly and integrate your systems more effectively.

Accessing Python 3.9.5-GCCcore-10.3.0

To load the module for Python 3.9.5-GCCcore-10.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Python/3.9.5-GCCcore-10.3.0

BEAR Apps Version

2021a

Architectures

EL8-cascadelakeEL8-haswellEL8-icelakeUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • alabaster 0.7.12
  • appdirs 1.4.4
  • asn1crypto 1.4.0
  • atomicwrites 1.4.0
  • attrs 21.2.0
  • Babel 2.9.1
  • bcrypt 3.2.0
  • bitstring 3.1.7
  • blist 1.3.6
  • CacheControl 0.12.6
  • cachy 0.3.0
  • certifi 2020.12.5
  • cffi 1.14.5
  • chardet 4.0.0
  • cleo 0.8.1
  • click 7.1.2
  • clikit 0.6.2
  • colorama 0.4.4
  • crashtest 0.3.1
  • cryptography 3.4.7
  • Cython 0.29.23
  • decorator 5.0.7
  • distlib 0.3.1
  • docopt 0.6.2
  • docutils 0.17.1
  • ecdsa 0.16.1
  • filelock 3.0.12
  • flit 3.2.0
  • flit-core-3.2.0
  • fsspec 2021.4.0
  • future 0.18.2
  • html5lib 1.1
  • idna 2.10
  • imagesize 1.2.0
  • importlib_metadata 4.0.1
  • iniconfig 1.1.1
  • intervaltree 3.1.0
  • intreehooks 1.0
  • ipaddress 1.0.23
  • jeepney 0.6.0
  • Jinja2 2.11.3
  • joblib 1.0.1
  • jsonschema 3.2.0
  • keyring 21.8.0
  • keyrings.alt 4.0.2
  • liac-arff-2.5.0
  • lockfile 0.12.2
  • MarkupSafe 1.1.1
  • mock 4.0.3
  • more-itertools-8.7.0
  • msgpack 1.0.2
  • netaddr 0.8.0
  • netifaces 0.10.9
  • nose 1.3.7
  • packaging 20.9
  • paramiko 2.7.2
  • pastel 0.2.1
  • pathlib2 2.3.5
  • paycheck 1.0.2
  • pbr 5.6.0
  • pexpect 4.8.0
  • pip 21.1.1
  • pkginfo 1.7.0
  • pluggy 0.13.1
  • poetry 1.1.6
  • poetry-core-1.0.3
  • psutil 5.8.0
  • ptyprocess 0.7.0
  • py 1.10.0
  • py_expression_eval 0.3.13
  • pyasn1 0.4.8
  • pycparser 2.20
  • pycrypto 2.6.1
  • Pygments 2.9.0
  • pylev 1.3.0
  • PyNaCl 1.4.0
  • pyparsing 2.4.7
  • pyrsistent 0.17.3
  • pytest 6.2.4
  • python-dateutil-2.8.1
  • pytoml 0.1.21
  • pytz 2021.1
  • regex 2021.4.4
  • requests 2.25.1
  • requests-toolbelt-0.9.1
  • scandir 1.10.0
  • SecretStorage 3.3.1
  • semantic_version 2.8.5
  • setuptools 56.2.0
  • setuptools-rust-0.12.1
  • setuptools_scm 6.0.1
  • shellingham 1.4.0
  • simplegeneric 0.8.1
  • simplejson 3.17.2
  • six 1.16.0
  • snowballstemmer 2.1.0
  • sortedcontainers 2.3.0
  • Sphinx 4.0.0
  • sphinx-bootstrap-theme-0.7.1
  • sphinxcontrib-applehelp-1.0.2
  • sphinxcontrib-devhelp-1.0.2
  • sphinxcontrib-htmlhelp-1.0.3
  • sphinxcontrib-jsmath-1.0.1
  • sphinxcontrib-qthelp-1.0.3
  • sphinxcontrib-serializinghtml-1.1.4
  • sphinxcontrib-websupport-1.2.4
  • tabulate 0.8.9
  • threadpoolctl 2.1.0
  • toml 0.10.2
  • tomlkit 0.7.0
  • ujson 4.0.2
  • urllib3 1.26.4
  • virtualenv 20.4.6
  • wcwidth 0.2.5
  • webencodings 0.5.1
  • wheel 0.36.2
  • xlrd 2.0.1
  • zipp 3.4.1

More Information

For more information visit the Python website.

Dependencies

This version of Python has a direct dependency on: binutils/2.36.1-GCCcore-10.3.0 bzip2/1.0.8-GCCcore-10.3.0 GCCcore/10.3.0 GMP/6.2.1-GCCcore-10.3.0 libffi/3.3-GCCcore-10.3.0 libreadline/8.1-GCCcore-10.3.0 ncurses/6.2-GCCcore-10.3.0 OpenSSL/1.1 SQLite/3.35.4-GCCcore-10.3.0 XZ/5.2.5-GCCcore-10.3.0 zlib/1.2.11-GCCcore-10.3.0

Required By

This version of Python is a direct dependent of: AlphaFold/2.1.1-foss-2021a AlphaFold/2.1.1-foss-2021a-CUDA-11.3.1 AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1 AlphaPulldown/0.21.6-foss-2021a-CUDA-11.3.1 archspec/0.1.2-GCCcore-10.3.0 ASE/3.22.0-foss-2021a astropy/5.0.4-foss-2021a autograd/1.4-foss-2021a Barracuda_Virtual_Reactor/21.1.1-GCCcore-10.3.0 Biopython/1.79-foss-2021a bokeh/2.4.1-foss-2021a Boost.Python/1.76.0-foss-2021a-numpy BRHCLUS/4.7.2-foss-2021a bx-python/0.8.11-foss-2021a CellBender/0.2.0-foss-2021a-CUDA-11.3.1 CellBender/0.2.0-foss-2021a Cellpose/0.6.5-foss-2021a-CUDA-11.3.1 Cellpose/0.6.5-foss-2021a CellRank/1.5.1-foss-2021a CESM/2.1.3-foss-2021a cgat/0.6.5-foss-2021a CheckM/1.1.3-foss-2021a coexist/0.2.2-foss-2021a cppy/1.1.0-GCCcore-10.3.0 cutadapt/3.7-GCCcore-10.3.0 dask/2021.9.1-foss-2021a deepBlink/0.1.2-foss-2021a deepBlink/0.1.2-foss-2021a-CUDA-11.3.1 demultiplex/1.2.2-foss-2021a DendroPy/4.5.2-GCCcore-10.3.0 ETE/3.1.2-foss-2021a expecttest/0.1.3-GCCcore-10.3.0 Flask/1.1.4-GCCcore-10.3.0 flatbuffers-python/2.0-GCCcore-10.3.0 FSL/6.0.5.1-foss-2021a FSLeyes/1.3.3-foss-2021a GDAL/3.3.0-foss-2021a Gdspy/1.6.12-foss-2021a GitPython/3.1.18-GCCcore-10.3.0 gmsh/4.11.0-foss-2021a GObject-Introspection/1.68.0-GCCcore-10.3.0 GROMACS/2021.3-foss-2021a-CUDA-11.3.1 GROMACS/2021.3-foss-2021a GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2 GTDB-Tk/2.0.0-foss-2021a h5py/3.2.1-foss-2021a HH-suite/3.3.0-gompi-2021a Horovod/0.23.0-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0 Horovod/0.23.0-foss-2021a-CUDA-11.3.1-TensorFlow-2.6.0 hypothesis/6.13.1-GCCcore-10.3.0 IPython/7.25.0-GCCcore-10.3.0 IRkernel/1.2-foss-2021a-R-4.1.0 jax/0.3.9-foss-2021a-CUDA-11.3.1 jax/0.2.24-foss-2021a jax/0.2.24-foss-2021a-CUDA-11.3.1 JupyterLab/3.0.16-GCCcore-10.3.0 JupyterLab/3.2.5-GCCcore-10.3.0 Kaleido/0.2.1-GCCcore-10.3.0 Kornia/0.6.3-foss-2021a-CUDA-11.3.1 Kornia/0.6.3-foss-2021a LAMMPS/29Sep2021-foss-2021a-kokkos LAMMPS/29Sep2021-foss-2021a-CUDA-11.3.1-kokkos leidenalg/0.8.7-foss-2021a loompy/3.0.7-foss-2021a lxml/4.6.3-GCCcore-10.3.0 MAGeCK/0.5.9.4-foss-2021a Mako/1.1.4-GCCcore-10.3.0 matplotlib/3.4.2-foss-2021a Meep/1.23.0-foss-2021a Megalodon/2.4.2-foss-2021a Meson/0.58.0-GCCcore-10.3.0 MPB/1.11.1-foss-2021a MRtrix/3.0.3-foss-2021a networkx/2.5.1-foss-2021a NiBabel/3.2.1-foss-2021a NLopt/2.7.0-foss-2021a-Python numba/0.53.1-foss-2021a Open3D/0.15.1-foss-2021a OpenCV/4.5.3-foss-2021a-contrib OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib ORTHOLOGER/2.4.3-foss-2021a pept/0.4.1-foss-2021a PETSc/3.15.1-foss-2021a petsc4py/3.15.0-foss-2021a PICI-LIGGGHTS/20220118-foss-2021a-VTK-8.2.0 Pillow/8.2.0-GCCcore-10.3.0 Pillow-SIMD/8.2.0-GCCcore-10.3.0 pkgconfig/1.5.4-GCCcore-10.3.0-python plotly.py/5.1.0-GCCcore-10.3.0 PLUMED/2.7.2-iomkl-2021a PLUMED/2.7.2-foss-2021a protobuf-python/3.17.3-GCCcore-10.3.0 pyBigWig/0.3.18-foss-2021a pybind11/2.6.2-GCCcore-10.3.0 PyCairo/1.20.1-GCCcore-10.3.0 pydicom/2.2.2-GCCcore-10.3.0 PyOpenGL/3.1.5-GCCcore-10.3.0 PyQt5/5.15.4-GCCcore-10.3.0 Pysam/0.16.0.1-GCC-10.3.0 PyTables/3.6.1-foss-2021a pytest-xdist/2.3.0-GCCcore-10.3.0 python-igraph/0.9.6-foss-2021a python-isal/0.11.0-GCCcore-10.3.0 PyTorch/1.9.1-foss-2021a-imkl PyTorch/1.9.1-foss-2021a-CUDA-11.3.1-imkl PyTorch/1.10.0-foss-2021a-CUDA-11.3.1 PyTorch/1.10.0-foss-2021a PyTorch-Geometric/2.0.4-foss-2021a-CUDA-11.3.1 pytorch-lightning/1.5.7-foss-2021a-CUDA-11.3.1 pytorch-lightning/1.5.7-foss-2021a PyYAML/5.4.1-GCCcore-10.3.0 QEMU/6.2.0-GCCcore-10.3.0 RDFlib/6.1.1-GCCcore-10.3.0 Remora/0.1.2-foss-2021a rmats2sashimiplot/2.0.4-foss-2021a RNA-SeQC/2.4.2-foss-2021a scanpy/1.8.1-foss-2021a scikit-build/0.11.1-GCCcore-10.3.0 scikit-image/0.18.3-foss-2021a scikit-learn/0.24.2-foss-2021a SciPy-bundle/2021.05-foss-2021a SciPy-bundle/2021.05-iomkl-2021a SCons/4.1.0.post1-GCCcore-10.3.0 scVelo/0.2.4-foss-2021a Seaborn/0.11.2-foss-2021a SimPEG/0.18.1-foss-2021a slepc4py/3.15.1-foss-2021a spglib-python/1.16.1-foss-2021a statsmodels/0.12.2-foss-2021a tbb/2020.3-GCCcore-10.3.0 TC-Python/2022a-foss-2021a TensorFlow/2.6.0-foss-2021a TensorFlow/2.6.0-foss-2021a-CUDA-11.3.1 Tkinter/3.9.5-GCCcore-10.3.0 torchvision/0.11.1-foss-2021a-CUDA-11.3.1 torchvision/0.11.1-foss-2021a torchvision/0.11.1-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0 torchvision/0.11.1-foss-2021a-PyTorch-1.10.0 tqdm/4.61.2-GCCcore-10.3.0 Trilinos/13.2.0-foss-2021a typing-extensions/3.10.0.0-GCCcore-10.3.0 velocyto/0.17.17-foss-2021a VTK/8.2.0-foss-2021a VTK/9.0.1-foss-2021a wxPython/4.1.1-foss-2021a YACS/0.1.8-GCCcore-10.3.0

Other Versions

These versions of Python are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 10th September 2021