Installed Applications: 2021a and EL8-cascadelake

Applications available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). All 2021a or EL8-cascadelake applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
AlphaFold 2.1.1-foss-2021a
alsa-lib 1.2.6
ant 1.10.9-Java-11
apcluster 1.4.8-foss-2021a
archspec 0.1.2-GCCcore-10.3.0
Armadillo 10.7.4-foss-2021a
arpack-ng 3.8.0-foss-2021a
astropy 5.0.4-foss-2021a
ATK 2.36.0-GCCcore-10.3.0
at-spi2-atk 2.38.0-GCCcore-10.3.0
at-spi2-core 2.40.2-GCCcore-10.3.0
Autoconf 2.71-GCCcore-10.3.0
autograd 1.4-foss-2021a
Automake 1.16.3-GCCcore-10.3.0
Autotools 20210128-GCCcore-10.3.0
BamTools 2.5.2-GCC-10.3.0
Barracuda_Virtual_Reactor 21.1.1-GCCcore-10.3.0
Bazel 3.7.2-GCCcore-10.3.0
BEAR-R-bio 2021a-foss-2021a-R-4.1.0
BEDOPS 2.4.40-foss-2021a
BEDTools 2.30.0-GCC-10.3.0
binutils 2.36.1-GCCcore-10.3.0
binutils 2.36.1
Biopython 1.79-foss-2021a
Bison 3.7.6-GCCcore-10.3.0
Bison 3.7.6
Bison 3.5.3
BLAST+ 2.11.0-gompi-2021a
blockCV 2.1.4-foss-2021a-R-4.1.0
Blosc 1.21.0-GCCcore-10.3.0
bokeh 2.4.1-foss-2021a
Boost 1.76.0-intel-compilers-2021.2.0
Boost 1.76.0-GCC-10.3.0
Boost.Python 1.76.0-foss-2021a-numpy
Bowtie2 2.4.4-GCC-10.3.0
BRHCLUS 4.7.2-foss-2021a
bx-python 0.8.11-foss-2021a
bzip2 1.0.8-GCCcore-10.3.0
CAGEr 1.34.0-foss-2021a-R-4.1.0
cairo 1.16.0-GCCcore-10.3.0
CapnProto 0.9.1-GCCcore-10.3.0
CCL 1.12.1-GCCcore-10.3.0
CD-HIT 4.8.1-GCC-10.3.0
CellBender 0.2.0-foss-2021a
Cellpose 0.6.5-foss-2021a
CellRanger 7.0.0
CellRank 1.5.1-foss-2021a
cgat 0.6.5-foss-2021a
CheckM 1.1.3-foss-2021a
ChIPseeker 1.28.3-foss-2021a-R-4.1.0
Clang 12.0.1-GCCcore-10.3.0
CloudCompare 2.12.0-foss-2021a
CMake 3.20.1-GCCcore-10.3.0
coexist 0.2.2-foss-2021a
ConnectomeWorkbench 1.5.0-GCCcore-10.3.0
CP2K 9.1-iomkl-2021a
CP2K 9.1-foss-2021a
cppy 1.1.0-GCCcore-10.3.0
CST-Studio-Suite 2022.SP4-GCCcore-10.3.0-Java-11
ctffind 4.1.14-foss-2021a
CUDA 11.3.1
cURL 7.76.0-GCCcore-10.3.0
cutadapt 3.7-GCCcore-10.3.0
dask 2021.9.1-foss-2021a
DataCombine 0.2.21-foss-2021a-R-4.1.0
DB 18.1.40-GCCcore-10.3.0
DBus 1.13.18-GCCcore-10.3.0
dbus-glib 0.112-GCCcore-10.3.0
deal.II 9.3.1-iomkl-2021a
deal.II 9.3.1-foss-2021a
deal.II 20220223-iomkl-2021a
deal.II 20220223-foss-2021a
demultiplex 1.2.2-foss-2021a
DendroPy 4.5.2-GCCcore-10.3.0
docstring 1.0.0-foss-2021a
double-conversion 3.1.5-GCCcore-10.3.0
Doxygen 1.9.1-GCCcore-10.3.0
DualSPHysics 5.0.175-foss-2021a
Eigen 3.3.9-GCCcore-10.3.0
elfutils 0.185-GCCcore-10.3.0
EnhancedVolcano 20211028-foss-2021a-R-4.1.0
ETE 3.1.2-foss-2021a
expat 2.2.9-GCCcore-10.3.0
expecttest 0.1.3-GCCcore-10.3.0
FastANI 1.33-GCC-10.3.0
FastTree 2.1.11-GCCcore-10.3.0
FFmpeg 4.3.2-GCCcore-10.3.0
FFTW 3.3.9-iomkl-2021a
FFTW 3.3.9-gompi-2021a
fgbio 2.0.2
FIX 1.06.15-foss-2021a
FLAC 1.3.3-GCCcore-10.3.0
FLANN 1.9.2-foss-2021a
flatbuffers 2.0.0-GCCcore-10.3.0
flatbuffers-python 2.0-GCCcore-10.3.0
flex 2.6.4
FlexiBLAS 3.0.4-GCC-10.3.0
FLTK 1.3.6-GCCcore-10.3.0
fontconfig 2.13.93-GCCcore-10.3.0
footBayes 20211103-foss-2021a-R-4.1.0
foss 2021a
freeglut 3.2.1-GCCcore-10.3.0
FreeImage 3.18.0-GCCcore-10.3.0
FreeSurfer 7.2.0-centos8_x86_64
freesurfer 1.6.8-foss-2021a-R-4.1.0
FreeTDS 1.3.3-GCCcore-10.3.0
freetype 2.10.4-GCCcore-10.3.0
FriBidi 1.0.10-GCCcore-10.3.0
FSL 6.0.5.1-foss-2021a-fslpython
FSL 6.0.5.1-foss-2021a
FSLeyes 1.3.3-foss-2021a
fslr 2.24.1-foss-2021a-R-4.1.0
gc 8.0.4-GCCcore-10.3.0
GCC 10.3.0
GCCcore 10.3.0
GConf 3.2.6-GCCcore-10.3.0
GDAL 3.3.0-foss-2021a
gdalUtils 2.0.3.2-foss-2021a-R-4.1.0
Gdk-Pixbuf 2.42.6-GCCcore-10.3.0
GeomxTools 1.0.0-foss-2021a-R-4.1.0
GEOS 3.9.1-GCC-10.3.0
gettext 0.21-GCCcore-10.3.0
gettext 0.21
Ghostscript 9.54.0-GCCcore-10.3.0
Gibbs2 1.0-GCC-10.3.0
giflib 5.2.1-GCCcore-10.3.0
GingerALE 3.0.2
git 2.32.0-GCCcore-10.3.0-nodocs
glew 2.1.0-GCCcore-10.3.0
GLib 2.68.2-GCCcore-10.3.0
GLibmm 2.49.7-GCCcore-10.3.0
GLM 0.9.9.8-GCCcore-10.3.0
GLPK 5.0-GCCcore-10.3.0
GMP 6.2.1-GCCcore-10.3.0
gnuplot 5.4.2-GCCcore-10.3.0
GObject-Introspection 1.68.0-GCCcore-10.3.0
gompi 2021a
gperf 3.1-GCCcore-10.3.0
groff 1.22.4-GCCcore-10.3.0
GROMACS 2021.3-foss-2021a
Groovy 4.0.3-Java-11
gsfisher 3ad1d79-foss-2021a-R-4.1.0
GSL 2.7-intel-compilers-2021.2.0
GSL 2.7-GCC-10.3.0
GST-plugins-base 1.18.4-GCC-10.3.0
GStreamer 1.18.4-GCC-10.3.0
GTDB-Tk 2.0.0-foss-2021a
GTK3 3.24.29-GCCcore-10.3.0
Guile 2.2.7-GCCcore-10.3.0
gzip 1.10-GCCcore-10.3.0
h5py 3.2.1-foss-2021a
HarfBuzz 2.8.1-GCCcore-10.3.0
Harminv 1.4.1-foss-2021a
HDF 4.2.15-GCCcore-10.3.0
HDF5 1.10.7-iompi-2021a
HDF5 1.10.7-gompi-2021a
help2man 1.48.3-GCCcore-10.3.0
help2man 1.47.4
HH-suite 3.3.0-gompi-2021a
HiCUP 0.8.3-foss-2021a
HMMER 3.3.2-gompi-2021a
HPL 2.3-iomkl-2021a
HPL 2.3-foss-2021a
HTSlib 1.12-GCC-10.3.0
hwloc 2.4.1-GCCcore-10.3.0
hypothesis 6.13.1-GCCcore-10.3.0
Hypre 2.21.0-foss-2021a
iClusterPlus 1.28.0-foss-2021a
ICU 69.1-GCCcore-10.3.0
igraph 0.9.4-foss-2021a
ImageMagick 7.0.11-14-GCCcore-10.3.0
imkl 2021.2.0-iompi-2021a
imkl 2021.2.0-gompi-2021a
intel-compilers 2021.2.0
intltool 0.51.0-GCCcore-10.3.0
iomkl 2021a
iompi 2021a
IPython 7.25.0-GCCcore-10.3.0
IRkernel 1.2-foss-2021a-R-4.1.0
ISA-L 2.30.0-GCCcore-10.3.0
ITK-SNAP 3.8.0-20190612-Linux-x86_64
JasPer 2.0.28-GCCcore-10.3.0
Java 1.8.0_281
Java 11.0.2
jax 0.2.24-foss-2021a
jbigkit 2.1-GCCcore-10.3.0
JsonCpp 1.9.4-GCCcore-10.3.0
Julia 1.6.3-linux-x86_64
JupyterLab 3.2.5-GCCcore-10.3.0
JupyterLab 3.0.16-GCCcore-10.3.0
Kaleido 0.2.1-GCCcore-10.3.0
Kalign 3.3.1-GCCcore-10.3.0
kim-api 2.2.1-GCCcore-10.3.0
Kornia 0.6.3-foss-2021a
LAME 3.100-GCCcore-10.3.0
LAMMPS 29Sep2021-foss-2021a-kokkos
leidenalg 0.8.7-foss-2021a
libarchive 3.5.1-GCCcore-10.3.0
libcerf 1.17-GCCcore-10.3.0
libctl 4.5.1-GCCcore-10.3.0
libdrm 2.4.106-GCCcore-10.3.0
libepoxy 1.5.8-GCCcore-10.3.0
libevent 2.1.12-GCCcore-10.3.0
libfabric 1.12.1-GCCcore-10.3.0
libffi 3.3-GCCcore-10.3.0
libgcrypt 1.9.2-GCCcore-10.3.0
libgd 2.3.1-GCCcore-10.3.0
libGDSII 0.21-GCCcore-10.3.0
libgeotiff 1.6.0-GCCcore-10.3.0
libgit2 1.1.0-GCCcore-10.3.0
libGLU 9.0.1-GCCcore-10.3.0
libglvnd 1.3.3-GCCcore-10.3.0
libgpg-error 1.42-GCCcore-10.3.0
libiconv 1.16-GCCcore-10.3.0
Libint 2.6.0-iompi-2021a-lmax-6-cp2k
Libint 2.6.0-GCC-10.3.0-lmax-6-cp2k
libjpeg-turbo 2.0.6-GCCcore-10.3.0
libogg 1.3.4-GCCcore-10.3.0
libpciaccess 0.16-GCCcore-10.3.0
libpng 1.6.37-GCCcore-10.3.0
libpng 1.2.59
libpsl 0.21.1-GCCcore-10.3.0
libreadline 8.1-GCCcore-10.3.0
libsigc++ 2.10.2-GCCcore-10.3.0
libsndfile 1.0.31-GCCcore-10.3.0
libsodium 1.0.18-GCCcore-10.3.0
LibSoup 2.74.0-GCCcore-10.3.0
libStatGen 1.0.15-GCCcore-10.3.0
libtasn1 4.17.0-GCCcore-10.3.0
LibTIFF 4.2.0-GCCcore-10.3.0
libtirpc 1.3.2-GCCcore-10.3.0
libtool 2.4.6-GCCcore-10.3.0
libunistring 0.9.10-GCCcore-10.3.0
libunwind 1.4.0-GCCcore-10.3.0
libvorbis 1.3.7-GCCcore-10.3.0
libwebp 1.2.0-GCCcore-10.3.0
libxc 5.1.5-intel-compilers-2021.2.0
libxc 5.1.5-GCC-10.3.0
libxml++ 2.40.1-GCCcore-10.3.0
libxml2 2.9.10-GCCcore-10.3.0
libxslt 1.1.34-GCCcore-10.3.0
libxsmm 1.16.2-intel-compilers-2021.2.0
libxsmm 1.16.2-GCC-10.3.0
libyaml 0.2.5-GCCcore-10.3.0
LittleCMS 2.12-GCCcore-10.3.0
LLVM 11.1.0-GCCcore-10.3.0
LMDB 0.9.28-GCCcore-10.3.0
log4r 0.4.2-foss-2021a
loompy 3.0.7-foss-2021a
Lua 5.4.3-GCCcore-10.3.0
lxml 4.6.3-GCCcore-10.3.0
lz4 1.9.3-GCCcore-10.3.0
LZO 2.10-GCCcore-10.3.0
M4 1.4.18-GCCcore-10.3.0
M4 1.4.18
MAGeCK 0.5.9.4-foss-2021a
makeinfo 6.7-GCCcore-10.3.0-minimal
Mako 1.1.4-GCCcore-10.3.0
Mash 2.3-GCC-10.3.0
MATIO 1.5.21-GCCcore-10.3.0
matplotlib 3.4.2-foss-2021a
MCR R2021a.3
Meep 1.23.0-foss-2021a
Megalodon 2.4.2-foss-2021a
Mesa 21.1.1-GCCcore-10.3.0
MESMER 6.1-foss-2021a
Meson 0.58.0-GCCcore-10.3.0
METIS 5.1.0-GCCcore-10.3.0
Miniconda3 4.9.2
Minimac4 1.0.2-foss-2021a
MMseqs2 13-45111-gompi-2021a
motif 2.3.8-GCCcore-10.3.0
MPB 1.11.1-foss-2021a
MPFR 4.1.0-GCCcore-10.3.0
MRIcron 1.0.20190902
MRtrix 3.0.3-foss-2021a
MSIsensor 0.6-GCCcore-10.3.0
MSIsensor2 0.1
mstate 0.3.2-foss-2021a-R-4.1.0
MUMPS 5.4.0-foss-2021a-metis
NASM 2.15.05-GCCcore-10.3.0
ncdf4 1.17-foss-2021a-R-4.1.0
ncurses 6.2-GCCcore-10.3.0
ncurses 6.2
netCDF 4.8.0-iompi-2021a
netCDF 4.8.0-gompi-2021a
nettle 3.7.2-GCCcore-10.3.0
networkx 2.5.1-foss-2021a
NiBabel 3.2.1-foss-2021a
Ninja 1.10.2-GCCcore-10.3.0
NLopt 2.7.0-GCCcore-10.3.0
NLopt 2.7.0-foss-2021a-Python
nodejs 14.17.0-GCCcore-10.3.0
NSPR 4.30-GCCcore-10.3.0
NSS 3.65-GCCcore-10.3.0
nsync 1.24.0-GCCcore-10.3.0
numactl 2.0.14-GCCcore-10.3.0
numba 0.53.1-foss-2021a
numdiff 5.9.0-GCCcore-10.3.0
occt 7.5.0p1-iomkl-2021a
occt 7.5.0p1-foss-2021a
Open3D 0.15.1-foss-2021a
OpenBLAS 0.3.15-GCC-10.3.0
OpenCV 4.5.3-foss-2021a-contrib
OpenEXR 3.0.1-GCCcore-10.3.0
OpenJPEG 2.4.0-GCCcore-10.3.0
OpenLB 1.4-0-GCCcore-10.3.0
OpenLB 1.4-0-foss-2021a
OpenMPI 4.1.1-intel-compilers-2021.2.0
OpenMPI 4.1.1-GCC-10.3.0
OpenPGM 5.2.122-GCCcore-10.3.0
OpenSSL 1.1
ORTHOLOGER 2.4.3-foss-2021a
OSU-Micro-Benchmarks 5.7.1-iompi-2021a
OSU-Micro-Benchmarks 5.7.1-gompi-2021a
p4est 2.3.3-foss-2021a
p4est 2.3.2-iomkl-2021a
Pango 1.48.5-GCCcore-10.3.0
ParMETIS 4.0.3-iompi-2021a
PCL 1.12.1-foss-2021a
PCRE 8.44-GCCcore-10.3.0
PCRE2 10.36-GCCcore-10.3.0
pept 0.4.1-foss-2021a
Perl 5.32.1-GCCcore-10.3.0-minimal
Perl 5.32.1-GCCcore-10.3.0
PETSc 3.15.1-foss-2021a
petsc4py 3.15.0-foss-2021a
pgloader 3.6.3-GCCcore-10.3.0
PharmacoGx 2.4.0-foss-2021a
phenoptrReports 0.3.0-foss-2021a-R-4.1.0
PICI-LIGGGHTS 20220118-foss-2021a-VTK-8.2.0
Pillow 8.2.0-GCCcore-10.3.0
Pillow-SIMD 8.2.0-GCCcore-10.3.0
pixman 0.40.0-GCCcore-10.3.0
pkg-config 0.29.2-GCCcore-10.3.0
pkg-config 0.29.2
pkgconfig 1.5.4-GCCcore-10.3.0-python
plotly.py 5.1.0-GCCcore-10.3.0
PLUMED 2.7.2-iomkl-2021a
PLUMED 2.7.2-foss-2021a
PMIx 3.2.3-GCCcore-10.3.0
PostgreSQL 13.3-GCCcore-10.3.0
pplacer 1.1.alpha19
prodigal 2.6.3-GCCcore-10.3.0
PROJ 8.0.1-GCCcore-10.3.0
protobuf 3.17.3-GCCcore-10.3.0
protobuf-python 3.17.3-GCCcore-10.3.0
pyBigWig 0.3.18-foss-2021a
pybind11 2.6.2-GCCcore-10.3.0
PyCairo 1.20.1-GCCcore-10.3.0
pydicom 2.2.2-GCCcore-10.3.0
PyOpenGL 3.1.5-GCCcore-10.3.0
PyQt5 5.15.4-GCCcore-10.3.0
Pysam 0.16.0.1-GCC-10.3.0
PyTables 3.6.1-foss-2021a
pytest-xdist 2.3.0-GCCcore-10.3.0
Python 3.9.5-GCCcore-10.3.0-bare
Python 3.9.5-GCCcore-10.3.0
Python 2.7.18-GCCcore-10.3.0-bare
python-igraph 0.9.6-foss-2021a
python-isal 0.11.0-GCCcore-10.3.0
PyTorch 1.9.1-foss-2021a-imkl
PyTorch 1.10.0-foss-2021a
pytorch-lightning 1.5.7-foss-2021a
PyYAML 5.4.1-GCCcore-10.3.0
QD 2.3.23-foss-2021a
Qhull 2020.2-GCCcore-10.3.0
QIIME2 2021.11
Qt5 5.15.2-GCCcore-10.3.0
Qwt 6.1.5-GCCcore-10.3.0
R 4.1.0-foss-2021a
R-bundle-Bioconductor 3.13-foss-2021a-R-4.1.0
rcdk 3.6.0-foss-2021a
RDFlib 6.1.1-GCCcore-10.3.0
re2c 2.1.1-GCCcore-10.3.0
RELION 3.1.3-foss-2021a
Remora 0.1.2-foss-2021a
ResMap 1.1.4
rgdal 1.5-23-foss-2021a-R-4.1.0
rmats2sashimiplot 2.0.4-foss-2021a
rmweather 0.1.51-foss-2021a-R-4.1.0
RNA-SeQC 2.4.2-foss-2021a
RStudio 2022.02.2-485
RStudio-Server 1.4.1717-foss-2021a-Java-11-R-4.1.0
RStudio-Server 1.3.1093-foss-2021a-Java-11-R-4.1.0
Ruby 3.0.1-GCCcore-10.3.0
Rust 1.58.1-GCCcore-10.3.0
Rust 1.52.1-GCCcore-10.3.0
SAMtools 1.12-GCC-10.3.0
SBCL 2.2.1-GCCcore-10.3.0
sbt 1.6.2-Java-1.8
ScaFaCoS 1.0.1-foss-2021a
ScaLAPACK 2.1.0-gompi-2021a-fb
scanpy 1.8.1-foss-2021a
scikit-build 0.11.1-GCCcore-10.3.0
scikit-image 0.18.3-foss-2021a
scikit-learn 0.24.2-foss-2021a
SciPy-bundle 2021.05-iomkl-2021a
SciPy-bundle 2021.05-foss-2021a
SCOTCH 6.1.0-iompi-2021a
SCOTCH 6.1.0-gompi-2021a
scVelo 0.2.4-foss-2021a
SDL2 2.0.14-GCCcore-10.3.0
Seaborn 0.11.2-foss-2021a
shinycssloaders 1.0.0-foss-2021a
SLEPc 3.15.1-foss-2021a
slepc4py 3.15.1-foss-2021a
snappy 1.1.8-GCCcore-10.3.0
SNFtool 2.3.1-foss-2021a
SOCI 4.0.2-GCC-10.3.0
splancs 2.01-42-foss-2021a
SQLite 3.35.4-GCCcore-10.3.0
STAR-CCM+ 16.06.008
statsmodels 0.12.2-foss-2021a
SuiteSparse 5.10.1-iomkl-2021a-METIS-5.1.0
SuiteSparse 5.10.1-foss-2021a-METIS-5.1.0
SUNDIALS 5.8.0-iomkl-2021a
SUNDIALS 5.8.0-foss-2021a
survcomp 1.42.0-foss-2021a
SWIG 4.0.2-GCCcore-10.3.0
SWIPE 2.1.1-GCC-10.3.0
Szip 2.1.1-GCCcore-10.3.0
Talairach 2.4.3
tbb 2020.3-GCCcore-10.3.0
Tcl 8.6.11-GCCcore-10.3.0
TC-Python 2022a-foss-2021a
tcsh 6.22.04-GCCcore-10.3.0
TensorFlow 2.6.0-foss-2021a
Thermo-Calc 2022a-foss-2021a
Tk 8.6.11-GCCcore-10.3.0
Tkinter 3.9.5-GCCcore-10.3.0
torchvision 0.11.1-foss-2021a-PyTorch-1.10.0
torchvision 0.11.1-foss-2021a
tqdm 4.61.2-GCCcore-10.3.0
treeseg 0.2.2-foss-2021a
Trilinos 13.2.0-iomkl-2021a
Trilinos 13.2.0-foss-2021a
TXR 273-GCCcore-10.3.0
typing-extensions 3.10.0.0-GCCcore-10.3.0
UCX 1.10.0-GCCcore-10.3.0
UDUNITS 2.2.28-GCCcore-10.3.0
UnZip 6.0-GCCcore-10.3.0
util-linux 2.36-GCCcore-10.3.0
VCFtools 0.1.16-GCC-10.3.0
velocyto 0.17.17-foss-2021a
Voro++ 0.4.6-GCCcore-10.3.0
VTK 9.0.1-foss-2021a
VTK 8.2.0-foss-2021a
WebKitGTK+ 2.27.4-GCC-10.3.0
writexl 1.4.0-foss-2021a-R-4.1.0
wxPython 4.1.1-foss-2021a
wxWidgets 3.1.5-GCC-10.3.0
X11 20210518-GCCcore-10.3.0
x264 20210414-GCCcore-10.3.0
x265 3.5-GCCcore-10.3.0
Xerces-C++ 3.2.3-GCCcore-10.3.0
xorg-macros 1.19.3-GCCcore-10.3.0
xprop 1.2.5-GCCcore-10.3.0
Xvfb 1.20.11-GCCcore-10.3.0
XZ 5.2.5-GCCcore-10.3.0
Yasm 1.3.0-GCCcore-10.3.0
Z3 4.8.11-GCCcore-10.3.0
ZeroMQ 4.3.4-GCCcore-10.3.0
Zip 3.0-GCCcore-10.3.0
zlib 1.2.11-GCCcore-10.3.0
zlib 1.2.11
zstd 1.4.9-GCCcore-10.3.0