rmats2sashimiplot 2.0.4-foss-2021a

rmats2sashimiplot produces a sashimiplot visualization of rMATS output. rmats2sashimiplot can also produce plots using an annotation file and genomic coordinates. The plotting backend is MISO.

Accessing rmats2sashimiplot 2.0.4-foss-2021a

To load the module for rmats2sashimiplot 2.0.4-foss-2021a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load rmats2sashimiplot/2.0.4-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the rmats2sashimiplot website.

Dependencies

This version of rmats2sashimiplot has a direct dependency on: BEDTools/2.30.0-GCC-10.3.0 foss/2021a matplotlib/3.4.2-foss-2021a Pysam/0.16.0.1-GCC-10.3.0 Python/3.9.5-GCCcore-10.3.0 SAMtools/1.12-GCC-10.3.0 SciPy-bundle/2021.05-foss-2021a

Last modified on 30th March 2022